Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 22.34 | 38.18 |
| GSMUA_Achr11P... | Banana | nucleus | 28.19 | 37.59 |
| GSMUA_Achr9P03210_001 | Banana | nucleus | 27.66 | 37.14 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 19.68 | 37.0 |
| PGSC0003DMT400060523 | Potato | mitochondrion | 26.6 | 36.23 |
| VIT_06s0004g04180.t01 | Wine grape | nucleus | 29.26 | 34.59 |
| GSMUA_Achr11P... | Banana | nucleus | 27.66 | 34.44 |
| Solyc05g054650.1.1 | Tomato | plastid | 27.66 | 34.21 |
| VIT_13s0019g00480.t01 | Wine grape | nucleus | 31.38 | 33.52 |
| TraesCS4A01G174100.1 | Wheat | nucleus | 27.66 | 33.12 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 23.4 | 32.84 |
| TraesCS4D01G141500.1 | Wheat | nucleus | 27.66 | 32.7 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 28.19 | 31.74 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 29.26 | 31.43 |
| Os11t0702400-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 28.19 | 31.18 |
| GSMUA_Achr1P06720_001 | Banana | nucleus | 25.0 | 31.13 |
| GSMUA_Achr10P... | Banana | nucleus | 28.72 | 30.34 |
| GSMUA_Achr10P... | Banana | nucleus | 26.06 | 30.06 |
| KRG90559 | Soybean | nucleus | 27.66 | 30.06 |
| KRH70509 | Soybean | nucleus | 28.72 | 30.0 |
| GSMUA_Achr1P01260_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 24.47 | 29.87 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 27.13 | 29.82 |
| GSMUA_Achr5P29140_001 | Banana | nucleus | 26.6 | 28.74 |
| EES10296 | Sorghum | plastid | 27.13 | 27.87 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 22.34 | 27.63 |
| KRH36195 | Soybean | extracellular | 27.13 | 27.57 |
| GSMUA_Achr11P... | Banana | nucleus | 27.13 | 26.42 |
| Zm00001d045211_P001 | Maize | nucleus | 25.0 | 26.4 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 23.4 | 26.35 |
| GSMUA_Achr11P... | Banana | nucleus | 27.66 | 26.26 |
| PGSC0003DMT400060463 | Potato | nucleus | 26.6 | 24.04 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 25.53 | 23.76 |
| TraesCS4B01G143400.1 | Wheat | nucleus | 20.21 | 23.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.6 | 21.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P13530_001 | EnsemblPlants:GSMUA_Achr10T13530_001 | EnsemblPlantsGene:GSMUA_Achr10G13530_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF206 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002960949 | UniProt:M0RHX9 | MapMan:15.5.15 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G13530_001]
Coordinates
chr10:-:22123589..22124199
Molecular Weight (calculated)
20293.9 Da
IEP (calculated)
8.870
GRAVY (calculated)
-0.709
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEADTSSVI RPREASVTAG GGREQETGST EMDSLLLMLS CEEKQRGEVG GASRPSGAGG VRQFECKTCS RRFPTFQALG GHRTSHTRPR GRGDGCNPVQ
101: KMRPKLHSCP VCGLVFPMGQ ALGGHMRRHK TAAPDAHAAR EGGARELRWL DLNLPPLENE LQLQSLGFRY TAEGSATRDS SSYSSHSA
101: KMRPKLHSCP VCGLVFPMGQ ALGGHMRRHK TAAPDAHAAR EGGARELRWL DLNLPPLENE LQLQSLGFRY TAEGSATRDS SSYSSHSA
001: MVAESDNRDL TVDTAASCLM LLSGIGEHDG RKKRVFRCKT CERDFDSFQA LGGHRASHSK LTNSDDKSLP GSPKKKPKTT TTTTAHTCPI CGLEFPMGQA
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
101: LGGHMRKHRN EKEREKASNV LVTHSFMPET TTVTTLKKSS SGKRVACLDF DLTSVESFVN TELELGRTMY
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LX86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.