Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 73.51 | 68.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.89 | 44.1 |
| GSMUA_Achr11P... | Banana | nucleus | 56.29 | 44.04 |
| GSMUA_Achr1P01260_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 43.05 | 42.21 |
| GSMUA_Achr11P... | Banana | nucleus | 54.97 | 41.92 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 45.7 | 41.32 |
| GSMUA_Achr9P03210_001 | Banana | nucleus | 36.42 | 39.29 |
| GSMUA_Achr11P... | Banana | nucleus | 37.09 | 37.09 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 36.42 | 36.18 |
| GSMUA_Achr10P... | Banana | nucleus | 42.38 | 35.96 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 31.79 | 35.82 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 47.68 | 35.64 |
| GSMUA_Achr11P... | Banana | nucleus | 33.11 | 35.46 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 39.74 | 35.09 |
| GSMUA_Achr5P29140_001 | Banana | nucleus | 40.4 | 35.06 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.85 | 33.0 |
| Os04t0162500-01 | Rice | vacuole | 62.25 | 32.53 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 20.53 | 28.18 |
| Zm00001d036330_P001 | Maize | nucleus | 43.05 | 26.42 |
| KXG20985 | Sorghum | nucleus, plastid | 47.68 | 26.18 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 56.95 | 25.15 |
| GSMUA_Achr10P... | Banana | nucleus | 31.13 | 25.0 |
| Zm00001d004439_P001 | Maize | nucleus | 56.95 | 23.96 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 56.95 | 23.56 |
| Zm00001d024866_P001 | Maize | nucleus | 54.97 | 22.68 |
| EES10410 | Sorghum | nucleus | 56.29 | 21.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P06720_001 | EnsemblPlants:GSMUA_Achr1T06720_001 | EnsemblPlantsGene:GSMUA_Achr1G06720_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0002951DDA | UniProt:M0RXN0 | MapMan:15.5.15 | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G06720_001]
Coordinates
chr1:+:5352068..5352673
Molecular Weight (calculated)
16164.2 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.381
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MANCLILLAQ GRSLVAGAEN ETAVENASQA EKSTCKTCDK CFPSFQALGG HRTSHKKPKL APPRVHECSI CGAEFSSGQA LGGHMRRHRP ITESSEAKKE
101: KNVLPLDLNL PAPSDDDSQA LPKLPPPAAA FPFETQQPLV FSASALVDCH Y
101: KNVLPLDLNL PAPSDDDSQA LPKLPPPAAA FPFETQQPLV FSASALVDCH Y
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.