Factsheet for GSMUA_Achr5P29140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	68.39	66.85
GSMUA_Achr9P03210_001	Banana	nucleus	53.45	66.43
GSMUA_Achr5P28550_001	Banana	nucleus	55.75	56.73
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus	49.43	56.58
PGSC0003DMT400060523	Potato	mitochondrion	43.1	54.35
GSMUA_Achr11P...	Banana	nucleus	47.13	54.3
VIT_06s0004g04180.t01	Wine grape	nucleus	47.13	51.57
Solyc05g054650.1.1	Tomato	plastid	44.83	51.32
GSMUA_Achr6P33180_001	Banana	nucleus	39.08	50.75
VIT_13s0019g00480.t01	Wine grape	nucleus	51.15	50.57
KRH01600	Soybean	cytosol, extracellular, nucleus	48.85	48.57
KRH70509	Soybean	nucleus	49.43	47.78
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	29.89	47.27
KRG90559	Soybean	nucleus	46.55	46.82
Solyc05g054660.1.1	Tomato	nucleus, plastid	44.25	46.11
GSMUA_Achr8P02630_001	Banana	nucleus	26.44	46.0
KRH36195	Soybean	extracellular	47.13	44.32
GSMUA_Achr1P06720_001	Banana	nucleus	35.06	40.4
GSMUA_Achr10P...	Banana	nucleus	37.36	39.88
GSMUA_Achr11P...	Banana	nucleus	32.18	39.72
GSMUA_Achr1P01260_001	Banana	mitochondrion, nucleus, peroxisome, plastid	30.46	34.42
PGSC0003DMT400060463	Potato	nucleus	40.8	34.13
GSMUA_Achr11P...	Banana	nucleus	36.21	32.64
GSMUA_Achr11P...	Banana	nucleus	36.78	32.32
GSMUA_AchrUn_...	Banana	nucleus	39.08	29.69
GSMUA_Achr1P03310_001	Banana	nucleus	28.16	29.34
GSMUA_Achr8P12900_001	Banana	nucleus	32.76	28.22
GSMUA_Achr10P...	Banana	nucleus	28.74	26.6

Protein Annotations

EnsemblPlants:GSMUA_Achr5P29140_001	EnsemblPlants:GSMUA_Achr5T29140_001	EnsemblPlantsGene:GSMUA_Achr5G29140_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002956EB6	UniProt:M0T2N8	MapMan:15.5.15	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G29140_001]

Coordinates

chr5:-:29007049..29007573

Molecular Weight (calculated)

18829.6 Da

IEP (calculated)

8.721

GRAVY (calculated)

-0.464

Length

174 amino acids

Sequence
(BLAST)

001: MKRCRFGGGE GEKEVACINM ANVLLLLSRG RSGGGTQESD YLVQSSSERV FECRTCNRQF PSFQALGGHR ASHKKPRLDG HGHGQAQAGA AAKRRVHECS
101: ICGVEFAIGQ ALGGHMRRHR ATTTGGSGLI LAAEKPVERR GKLLDLNLPP LENDIKLGPG SEVMDEIPMV DCWH

Best Arabidopsis Sequence Match ( AT3G53600.1 )
(BLAST)

001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN

Arabidopsis Description

At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.