Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P02630_001 | Banana | nucleus | 58.18 | 64.0 |
| GSMUA_Achr9P03210_001 | Banana | nucleus | 45.45 | 35.71 |
| GSMUA_Achr11P... | Banana | nucleus | 44.55 | 32.45 |
| GSMUA_Achr5P29140_001 | Banana | nucleus | 47.27 | 29.89 |
| GSMUA_Achr6P33180_001 | Banana | nucleus | 36.36 | 29.85 |
| GSMUA_Achr10P... | Banana | nucleus | 48.18 | 29.78 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus | 40.91 | 29.61 |
| GSMUA_Achr11P... | Banana | nucleus | 37.27 | 29.08 |
| GSMUA_Achr5P28550_001 | Banana | nucleus | 44.55 | 28.66 |
| KRG95850 | Soybean | nucleus | 38.18 | 27.1 |
| KRH67566 | Soybean | nucleus | 38.18 | 26.58 |
| KRH32333 | Soybean | nucleus | 38.18 | 25.61 |
| KRG95848 | Soybean | nucleus | 39.09 | 25.15 |
| KRH67564 | Soybean | nucleus | 39.09 | 24.86 |
| KRH19742 | Soybean | nucleus | 40.91 | 24.73 |
| AT2G28710.1 | Thale cress | nucleus | 34.55 | 24.36 |
| Bra030981.1-P | Field mustard | nucleus | 40.0 | 24.31 |
| CDY07790 | Canola | nucleus | 40.0 | 24.31 |
| CDY65670 | Canola | nucleus | 39.09 | 24.02 |
| CDY31725 | Canola | nucleus | 31.82 | 23.65 |
| Bra035678.1-P | Field mustard | nucleus | 31.82 | 23.65 |
| CDX77198 | Canola | nucleus | 31.82 | 23.65 |
| Bra011931.1-P | Field mustard | cytosol | 31.82 | 23.33 |
| CDY15775 | Canola | nucleus | 31.82 | 23.33 |
| CDY04582 | Canola | nucleus | 31.82 | 23.33 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 33.64 | 23.27 |
| KRH19739 | Soybean | cytosol, nucleus | 33.64 | 23.27 |
| KRH32335 | Soybean | nucleus | 37.27 | 22.91 |
| CDX93380 | Canola | nucleus | 37.27 | 22.91 |
| AT3G53600.1 | Thale cress | nucleus | 36.36 | 22.86 |
| CDY30857 | Canola | nucleus | 34.55 | 22.75 |
| GSMUA_Achr10P... | Banana | nucleus | 38.18 | 22.34 |
| Bra017188.1-P | Field mustard | nucleus | 36.36 | 22.22 |
| CDY18446 | Canola | nucleus | 36.36 | 22.22 |
| CDY52747 | Canola | nucleus | 33.64 | 22.02 |
| Bra003148.1-P | Field mustard | nucleus | 33.64 | 22.02 |
| CDY07578 | Canola | nucleus | 33.64 | 22.02 |
| AT2G37430.1 | Thale cress | nucleus | 35.45 | 21.91 |
| Bra039806.1-P | Field mustard | nucleus | 34.55 | 21.84 |
| CDX76199 | Canola | nucleus | 34.55 | 21.84 |
| CDX91362 | Canola | nucleus | 35.45 | 21.67 |
| CDX74961 | Canola | nucleus | 35.45 | 21.67 |
| PGSC0003DMT400077933 | Potato | nucleus | 30.91 | 21.66 |
| KRH32334 | Soybean | nucleus | 34.55 | 20.99 |
| GSMUA_Achr10P... | Banana | nucleus | 30.91 | 20.86 |
| GSMUA_Achr1P06720_001 | Banana | nucleus | 28.18 | 20.53 |
| Bra005197.1-P | Field mustard | nucleus | 30.91 | 20.36 |
| GSMUA_Achr11P... | Banana | nucleus | 35.45 | 20.21 |
| KRH19741 | Soybean | nucleus | 31.82 | 19.89 |
| GSMUA_Achr1P01260_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 27.27 | 19.48 |
| GSMUA_Achr11P... | Banana | nucleus | 34.55 | 19.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.27 | 17.9 |
| GSMUA_Achr8P12900_001 | Banana | nucleus | 32.73 | 17.82 |
| PGSC0003DMT400090011 | Potato | nucleus | 23.64 | 16.77 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 24.55 | 16.17 |
| Solyc03g093870.1.1 | Tomato | nucleus | 21.82 | 13.79 |
| PGSC0003DMT400021456 | Potato | nucleus | 23.64 | 13.54 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P34280_001 | EnsemblPlants:GSMUA_Achr6T34280_001 | EnsemblPlantsGene:GSMUA_Achr6G34280_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF162 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000296D84A | UniProt:M0TCM1 |
| MapMan:15.5.15 | : | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G34280_001]
Coordinates
chr6:-:32993355..32993687
Molecular Weight (calculated)
11859.3 Da
IEP (calculated)
10.758
GRAVY (calculated)
-0.572
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRYRFGGEG EEMDRIRLVD ILMLLSRGGA GGGVGESEKS SAGRVFECKT CSRRFPSFQA LGGHRASHKK LRAAGNDHGR PQGGAAAKPK LHSAPYALRR
101: AYETALSICP
101: AYETALSICP
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.