Factsheet for Bra011931.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04582	Canola	nucleus	99.33	99.33
CDY15775	Canola	nucleus	98.67	98.67
Bra035678.1-P	Field mustard	nucleus	91.33	92.57
AT2G28710.1	Thale cress	nucleus	89.33	85.9
Bra020284.1-P	Field mustard	nucleus	33.33	44.64
Bra006691.1-P	Field mustard	nucleus	44.67	42.14
Bra006692.1-P	Field mustard	nucleus	44.67	42.14
Bra002528.1-P	Field mustard	nucleus	42.0	39.38
PGSC0003DMT400077933	Potato	nucleus	40.67	38.85
Bra005197.1-P	Field mustard	nucleus	41.33	37.13
Bra019477.1-P	Field mustard	nucleus	42.0	37.06
Bra017188.1-P	Field mustard	nucleus	44.0	36.67
Bra003148.1-P	Field mustard	nucleus	39.33	35.12
Bra030981.1-P	Field mustard	nucleus	42.0	34.81
Bra018225.1-P	Field mustard	nucleus	43.33	33.85
PGSC0003DMT400090011	Potato	nucleus	34.67	33.55
Bra039806.1-P	Field mustard	nucleus	38.67	33.33
Bra019476.1-P	Field mustard	nucleus	36.67	32.54
GSMUA_Achr8P02630_001	Banana	nucleus	21.33	32.0
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	23.33	31.82
Solyc03g093870.1.1	Tomato	nucleus	36.67	31.61
PGSC0003DMT400021456	Potato	nucleus	38.0	29.69
Bra028831.1-P	Field mustard	nucleus	40.0	22.39
Bra009525.1-P	Field mustard	nucleus	38.67	21.89
Bra005766.1-P	Field mustard	nucleus	38.67	21.01
Bra034396.1-P	Field mustard	nucleus	40.0	20.55
Bra034116.1-P	Field mustard	plastid	38.0	20.5
Bra011970.1-P	Field mustard	nucleus	39.33	20.49
Bra029843.1-P	Field mustard	nucleus	38.0	17.54
Bra005803.1-P	Field mustard	nucleus	40.0	16.71
Bra028791.1-P	Field mustard	nucleus	38.67	16.48
Bra009457.1-P	Field mustard	nucleus	36.67	15.94

Protein Annotations

EnsemblPlants:Bra011931.1	EnsemblPlants:Bra011931.1-P	EnsemblPlantsGene:Bra011931	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025412E6
UniProt:M4D623	MapMan:15.5.15	:	:	:	:

Description

AT2G28710 (E=6e-072) | zinc finger (C2H2 type) family protein

Coordinates

chrA07:+:11243542..11243994

Molecular Weight (calculated)

16339.0 Da

IEP (calculated)

10.403

GRAVY (calculated)

-0.447

Length

150 amino acids

Sequence
(BLAST)

001: MEKEREMEMI NKMASCLIFL SKAHQHDTKG RVFACKTCNK EFSSFQALGG HRASHRRSAA LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGSSRSLAP APVTMKKTGG GNAKRVLCLD LNLTPVENED LKLELGRLIL

Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)

001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF

Arabidopsis Description

At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.