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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400090011 Potato nucleus 46.5 47.1
PGSC0003DMT400060523 Potato mitochondrion 40.13 45.65
PGSC0003DMT400040144 Potato nucleus 46.5 44.24
PGSC0003DMT400040142 Potato nucleus 46.5 44.24
PGSC0003DMT400040143 Potato nucleus 46.5 43.98
Bra035678.1-P Field mustard nucleus 39.49 41.89
CDX77198 Canola nucleus 39.49 41.89
CDY31725 Canola nucleus 39.49 41.89
PGSC0003DMT400077934 Potato cytosol, nucleus, plastid 43.31 41.46
CDY15775 Canola nucleus 39.49 41.33
PGSC0003DMT400040141 Potato nucleus 44.59 41.18
PGSC0003DMT400040206 Potato nucleus 44.59 40.94
PGSC0003DMT400040207 Potato nucleus 42.68 40.85
Bra011931.1-P Field mustard cytosol 38.85 40.67
CDY04582 Canola nucleus 38.85 40.67
AT2G28710.1 Thale cress nucleus 40.13 40.38
PGSC0003DMT400021456 Potato nucleus 47.77 39.06
GSMUA_Achr8P02630_001 Banana nucleus 20.38 32.0
GSMUA_Achr6P34280_001 Banana cytosol, mitochondrion, nucleus 21.66 30.91
PGSC0003DMT400060463 Potato nucleus 40.13 30.29
PGSC0003DMT400001104 Potato nucleus 38.85 20.96
PGSC0003DMT400009871 Potato nucleus 39.49 20.81
PGSC0003DMT400018457 Potato nucleus 40.76 19.45
PGSC0003DMT400079773 Potato nucleus 38.85 16.58
Protein Annotations
EnsemblPlants:PGSC0003DMT400077933EnsemblPlantsGene:PGSC0003DMG400030311EntrezGene:102583091Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF198
PFAM:PF13912PFscan:PS50157PGSC:PGSC0003DMG400030311RefSeq:XP_006350904.1ScanProsite:PS00028SEG:seg
SMART:SM00355SUPFAM:SSF57667UniParc:UPI00029630F3UniProt:M1CZ26MapMan:15.5.15:
Description
ZPT2-8 [Source:PGSC_GENE;Acc:PGSC0003DMG400030311]
Coordinates
chr6:+:56379375..56379923
Molecular Weight (calculated)
18013.9 Da
IEP (calculated)
9.704
GRAVY (calculated)
-0.643
Length
157 amino acids
Sequence
(BLAST)
001: MTIKRRREEE IVTVETLAMA NCVNILEKNS SLSRRFFECK TCKKQFESFQ ALGGHRASHK KPKLVLPSDS IKSKTKKHEC SYCGEEFVLG QALGGHMRKH
101: RDKLMEKPKE KNTYKSAEKM ETESGKKFCL DLNLTPYEND QLTLGIIPAF TVVHSLF
Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.