Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035678.1-P | Field mustard | nucleus | 98.65 | 98.65 |
| CDY31725 | Canola | nucleus | 98.65 | 98.65 |
| CDY15775 | Canola | nucleus | 92.57 | 91.33 |
| CDY04582 | Canola | nucleus | 91.89 | 90.67 |
| AT2G28710.1 | Thale cress | nucleus | 90.54 | 85.9 |
| CDY09252 | Canola | nucleus | 45.27 | 42.68 |
| CDY65692 | Canola | nucleus | 45.95 | 42.5 |
| CDX71073 | Canola | nucleus | 45.27 | 42.41 |
| CDX88724 | Canola | nucleus | 45.27 | 42.14 |
| CDY31593 | Canola | nucleus | 43.24 | 40.0 |
| CDX80226 | Canola | nucleus | 43.24 | 39.75 |
| PGSC0003DMT400077933 | Potato | nucleus | 41.89 | 39.49 |
| CDY30924 | Canola | nucleus | 43.24 | 37.65 |
| CDX93380 | Canola | nucleus | 43.92 | 36.31 |
| CDX91362 | Canola | nucleus | 43.92 | 36.11 |
| CDX68366 | Canola | nucleus | 42.57 | 35.59 |
| CDY18446 | Canola | nucleus | 43.24 | 35.56 |
| CDY30857 | Canola | nucleus | 39.86 | 35.33 |
| CDX74961 | Canola | nucleus | 42.57 | 35.0 |
| CDY52747 | Canola | nucleus | 39.19 | 34.52 |
| CDY65670 | Canola | nucleus | 41.22 | 34.08 |
| CDY07578 | Canola | nucleus | 38.51 | 33.93 |
| CDX99130 | Canola | nucleus | 43.92 | 33.85 |
| CDY07790 | Canola | nucleus | 41.22 | 33.7 |
| PGSC0003DMT400090011 | Potato | nucleus | 34.46 | 32.9 |
| CDX76199 | Canola | nucleus | 37.84 | 32.18 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 21.62 | 32.0 |
| CDX86044 | Canola | nucleus | 43.92 | 31.86 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 23.65 | 31.82 |
| Solyc03g093870.1.1 | Tomato | nucleus | 36.49 | 31.03 |
| CDY30925 | Canola | nucleus | 35.14 | 30.77 |
| CDY58688 | Canola | nucleus | 18.24 | 30.34 |
| PGSC0003DMT400021456 | Potato | nucleus | 37.16 | 28.65 |
| CDY11027 | Canola | nucleus | 36.49 | 23.38 |
| CDY30501 | Canola | nucleus | 39.19 | 23.2 |
| CDX71375 | Canola | nucleus | 39.86 | 23.14 |
| CDY04544 | Canola | nucleus | 39.86 | 23.05 |
| CDY70037 | Canola | nucleus | 39.19 | 23.02 |
| CDY41350 | Canola | nucleus, plastid | 38.51 | 22.62 |
| CDY71034 | Canola | nucleus | 37.16 | 22.45 |
| CDY44371 | Canola | nucleus | 39.86 | 22.01 |
| CDX80870 | Canola | nucleus | 37.16 | 21.65 |
| CDY11255 | Canola | nucleus | 37.16 | 21.65 |
| CDY04886 | Canola | nucleus | 39.19 | 21.64 |
| CDX70302 | Canola | nucleus | 37.84 | 21.13 |
| CDY10376 | Canola | nucleus | 37.84 | 21.13 |
| CDY11288 | Canola | nucleus | 39.86 | 17.93 |
| CDY58436 | Canola | nucleus | 39.86 | 17.35 |
| CDY44852 | Canola | nucleus | 37.84 | 17.23 |
| CDY08602 | Canola | nucleus | 39.19 | 17.16 |
| CDX70228 | Canola | nucleus | 37.16 | 16.98 |
| CDY00945 | Canola | nucleus | 38.51 | 16.86 |
| CDY61764 | Canola | nucleus | 38.51 | 16.76 |
| CDX89591 | Canola | nucleus | 20.95 | 14.9 |
| CDY05027 | Canola | nucleus | 16.22 | 14.37 |
| CDY42128 | Canola | nucleus | 19.59 | 13.0 |
Protein Annotations
| EnsemblPlants:CDX77198 | EnsemblPlantsGene:GSBRNA2T00127852001 | Gene3D:3.30.160.60 | GO:A0A078CQ50 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDX77198 | ProteinID:CDX77198.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EAD1E5 | MapMan:15.5.15 | : | : |
Description
BnaC04g39930D
Coordinates
chrLK031809:+:2029151..2029597
Molecular Weight (calculated)
16058.6 Da
IEP (calculated)
10.310
GRAVY (calculated)
-0.578
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEREIEMI NKMASCLIYL SKAHQHDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA LEGHATPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGGSRSLAP APVTMKKSGG GNGKRVLCMD LNLTPGENDD LKLELGRL
101: GGGGSRSLAP APVTMKKSGG GNGKRVLCMD LNLTPGENDD LKLELGRL
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.