Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76199 | Canola | nucleus | 88.02 | 84.48 |
| CDY07578 | Canola | nucleus | 74.25 | 73.81 |
| CDY52747 | Canola | nucleus | 74.25 | 73.81 |
| AT3G53600.1 | Thale cress | nucleus | 74.85 | 71.43 |
| CDY65670 | Canola | nucleus | 53.29 | 49.72 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 47.31 | 49.69 |
| CDY07790 | Canola | nucleus | 53.29 | 49.17 |
| KRH67564 | Soybean | nucleus | 49.1 | 47.4 |
| KRG95848 | Soybean | nucleus | 48.5 | 47.37 |
| CDY18446 | Canola | nucleus | 50.9 | 47.22 |
| CDX91362 | Canola | nucleus | 50.9 | 47.22 |
| KRH19739 | Soybean | cytosol, nucleus | 44.91 | 47.17 |
| KRH32333 | Soybean | nucleus | 46.11 | 46.95 |
| CDX93380 | Canola | nucleus | 49.7 | 46.37 |
| CDX74961 | Canola | nucleus | 49.7 | 46.11 |
| KRH19741 | Soybean | nucleus | 47.31 | 44.89 |
| KRH32335 | Soybean | nucleus | 47.9 | 44.69 |
| KRH67566 | Soybean | nucleus | 41.92 | 44.3 |
| KRH19742 | Soybean | nucleus | 47.9 | 43.96 |
| KRG95850 | Soybean | nucleus | 40.72 | 43.87 |
| CDY15775 | Canola | nucleus | 37.13 | 41.33 |
| KRH32334 | Soybean | nucleus | 44.31 | 40.88 |
| CDY04582 | Canola | nucleus | 36.53 | 40.67 |
| CDX77198 | Canola | nucleus | 35.33 | 39.86 |
| CDY31725 | Canola | nucleus | 35.33 | 39.86 |
| CDY09252 | Canola | nucleus | 34.73 | 36.94 |
| CDX71073 | Canola | nucleus | 34.73 | 36.71 |
| CDX88724 | Canola | nucleus | 34.13 | 35.85 |
| GSMUA_Achr8P02630_001 | Banana | nucleus | 20.96 | 35.0 |
| CDY65692 | Canola | nucleus | 33.53 | 35.0 |
| GSMUA_Achr6P34280_001 | Banana | cytosol, mitochondrion, nucleus | 22.75 | 34.55 |
| CDY31593 | Canola | nucleus | 32.93 | 34.38 |
| CDX80226 | Canola | nucleus | 32.93 | 34.16 |
| CDY30924 | Canola | nucleus | 33.53 | 32.94 |
| CDX68366 | Canola | nucleus | 32.93 | 31.07 |
| CDY30925 | Canola | nucleus | 29.34 | 28.99 |
| CDX99130 | Canola | nucleus | 31.74 | 27.6 |
| CDY58688 | Canola | nucleus | 14.37 | 26.97 |
| CDX71375 | Canola | nucleus | 40.72 | 26.67 |
| CDX86044 | Canola | nucleus | 32.34 | 26.47 |
| CDY04544 | Canola | nucleus | 40.12 | 26.17 |
| CDY30501 | Canola | nucleus | 38.32 | 25.6 |
| CDY70037 | Canola | nucleus | 38.32 | 25.4 |
| CDY11027 | Canola | nucleus | 34.13 | 24.68 |
| CDX80870 | Canola | nucleus | 35.93 | 23.62 |
| CDY11255 | Canola | nucleus | 35.33 | 23.23 |
| CDX70302 | Canola | nucleus | 36.53 | 23.02 |
| CDY41350 | Canola | nucleus, plastid | 34.73 | 23.02 |
| CDY10376 | Canola | nucleus | 35.93 | 22.64 |
| CDY44371 | Canola | nucleus | 35.93 | 22.39 |
| CDY04886 | Canola | nucleus | 35.93 | 22.39 |
| CDY71034 | Canola | nucleus | 31.14 | 21.22 |
| CDY08602 | Canola | nucleus | 37.13 | 18.34 |
| CDY00945 | Canola | nucleus | 36.53 | 18.05 |
| CDY11288 | Canola | nucleus | 34.73 | 17.63 |
| CDX70228 | Canola | nucleus | 34.13 | 17.59 |
| CDY44852 | Canola | nucleus | 33.53 | 17.23 |
| CDY58436 | Canola | nucleus | 34.73 | 17.06 |
| CDY61764 | Canola | nucleus | 34.13 | 16.76 |
| CDX89591 | Canola | nucleus | 18.56 | 14.9 |
| CDY05027 | Canola | nucleus | 14.37 | 14.37 |
| CDY42128 | Canola | nucleus | 16.17 | 12.11 |
Protein Annotations
| EnsemblPlants:CDY30857 | EnsemblPlantsGene:GSBRNA2T00046333001 | Gene3D:3.30.160.60 | GO:A0A078H041 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF198 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY30857 | ProteinID:CDY30857.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE0A92 | UniProt:A0A078H041 | MapMan:15.5.15 | : | : |
Description
BnaC04g27120DBnaC04g27120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H041]
Coordinates
chrLK032262:-:200202..200705
Molecular Weight (calculated)
18930.0 Da
IEP (calculated)
9.842
GRAVY (calculated)
-0.454
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRDRSDYED FITHIDMVKT ITMLSHSCVV KQIESTGSKT KGNRFECKTC NRKFDSFQAL GGHRASHKKP KLVSVEQEQA KHTVHKCSIC GQMFGTGQAL
101: GGHMRKHRES MINEQSVISS MVCSTSPVMN SSKRVMRLDL NLTPLENDLV YIFAKNLVPH IDLKFVN
101: GGHMRKHRES MINEQSVISS MVCSTSPVMN SSKRVMRLDL NLTPLENDLV YIFAKNLVPH IDLKFVN
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.