Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04886 | Canola | nucleus | 94.03 | 94.03 |
| CDY11027 | Canola | nucleus | 72.76 | 84.42 |
| CDY10376 | Canola | nucleus | 80.97 | 81.89 |
| CDX70302 | Canola | nucleus | 78.36 | 79.25 |
| CDY11255 | Canola | nucleus | 74.63 | 78.74 |
| CDX80870 | Canola | nucleus | 72.76 | 76.77 |
| AT5G03510.1 | Thale cress | nucleus | 80.6 | 73.97 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 25.75 | 41.32 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 42.16 | 40.94 |
| CDY15775 | Canola | nucleus | 22.76 | 40.67 |
| CDY04582 | Canola | nucleus | 22.76 | 40.67 |
| CDX77198 | Canola | nucleus | 22.01 | 39.86 |
| CDY31725 | Canola | nucleus | 22.01 | 39.86 |
| KRH67769 | Soybean | nucleus | 32.09 | 39.81 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 10.82 | 37.66 |
| PGSC0003DMT400009871 | Potato | nucleus | 41.42 | 37.25 |
| CDX71073 | Canola | nucleus | 21.64 | 36.71 |
| CDX91362 | Canola | nucleus | 24.63 | 36.67 |
| CDX74961 | Canola | nucleus | 24.63 | 36.67 |
| CDX88724 | Canola | nucleus | 21.64 | 36.48 |
| KRH19960 | Soybean | nucleus | 38.81 | 36.11 |
| CDY30857 | Canola | nucleus | 22.39 | 35.93 |
| Solyc09g008440.1.1 | Tomato | nucleus | 41.42 | 35.81 |
| CDX93380 | Canola | nucleus | 23.88 | 35.75 |
| CDY09252 | Canola | nucleus | 20.9 | 35.67 |
| CDY31593 | Canola | nucleus | 21.27 | 35.62 |
| CDY30501 | Canola | nucleus | 33.21 | 35.6 |
| CDY18446 | Canola | nucleus | 23.88 | 35.56 |
| CDX80226 | Canola | nucleus | 21.27 | 35.4 |
| CDY70037 | Canola | nucleus | 33.21 | 35.32 |
| KRH32562 | Soybean | nucleus | 39.18 | 35.23 |
| CDX76199 | Canola | nucleus | 22.76 | 35.06 |
| CDY71034 | Canola | nucleus | 31.72 | 34.69 |
| CDY52747 | Canola | nucleus | 21.64 | 34.52 |
| CDX71375 | Canola | nucleus | 32.84 | 34.51 |
| CDY04544 | Canola | nucleus | 32.84 | 34.38 |
| CDY65692 | Canola | nucleus | 20.52 | 34.38 |
| CDY07578 | Canola | nucleus | 21.27 | 33.93 |
| CDY07790 | Canola | nucleus | 22.76 | 33.7 |
| CDY65670 | Canola | nucleus | 22.39 | 33.52 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 8.58 | 33.33 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.58 | 33.33 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 8.58 | 33.33 |
| CDY41350 | Canola | nucleus, plastid | 30.97 | 32.94 |
| CDY44852 | Canola | nucleus | 39.55 | 32.62 |
| CDY58688 | Canola | nucleus | 10.82 | 32.58 |
| CDX70228 | Canola | nucleus | 39.18 | 32.41 |
| Zm00001d036330_P001 | Maize | nucleus | 29.48 | 32.11 |
| CDY11288 | Canola | nucleus | 39.18 | 31.91 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.21 | 31.88 |
| KXG20985 | Sorghum | nucleus, plastid | 32.09 | 31.27 |
| CDY58436 | Canola | nucleus | 39.55 | 31.18 |
| CDY30924 | Canola | nucleus | 19.78 | 31.18 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.96 | 31.17 |
| CDX68366 | Canola | nucleus | 20.52 | 31.07 |
| CDY08602 | Canola | nucleus | 38.06 | 30.18 |
| CDY00945 | Canola | nucleus | 38.06 | 30.18 |
| CDY61764 | Canola | nucleus | 38.06 | 30.0 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.58 | 29.87 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.58 | 29.87 |
| CDY30925 | Canola | nucleus | 18.66 | 29.59 |
| Zm00001d004439_P001 | Maize | nucleus | 39.55 | 29.53 |
| Os04t0162500-01 | Rice | vacuole | 30.97 | 28.72 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 36.57 | 28.66 |
| CDX99130 | Canola | nucleus | 20.52 | 28.65 |
| KRG96047 | Soybean | mitochondrion | 37.31 | 27.7 |
| Zm00001d024866_P001 | Maize | nucleus | 37.69 | 27.6 |
| CDX89591 | Canola | nucleus | 21.27 | 27.4 |
| Zm00001d051865_P001 | Maize | nucleus | 33.58 | 27.27 |
| CDX86044 | Canola | nucleus | 20.52 | 26.96 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 34.33 | 26.74 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 35.82 | 26.3 |
| EES10410 | Sorghum | nucleus | 38.06 | 25.44 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 33.96 | 25.21 |
| CDY42128 | Canola | nucleus | 20.9 | 25.11 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 33.96 | 24.93 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 33.96 | 24.86 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 33.96 | 24.8 |
| EES07783 | Sorghum | nucleus | 33.96 | 23.27 |
| CDY05027 | Canola | nucleus | 14.18 | 22.75 |
Protein Annotations
| EnsemblPlants:CDY44371 | EnsemblPlantsGene:GSBRNA2T00080037001 | Gene3D:3.30.160.60 | GO:A0A078I3C5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY44371 | ProteinID:CDY44371.1 | ScanProsite:PS00028 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE41E8 | UniProt:A0A078I3C5 | MapMan:15.5.15 | : | : |
Description
BnaC02g03060DBnaC02g03060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3C5]
Coordinates
chrLK032587:+:178263..179135
Molecular Weight (calculated)
29110.1 Da
IEP (calculated)
7.195
GRAVY (calculated)
-0.638
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSFHEETRL VLLTKGKRTK RPRSESPHMN AEAVSGVCSD RSLGAKEEEA DEVEFQGATD EDQDMANCLM LLSQGHKAKS SGDHLSTQKT GFLSDKKPVG
101: SLGLGLDGVY PCKTCDKSFH SFQALGGHRA SHKKSKRDEK NSASAVETVE SAETVGSFLS LQVTSSDGSK KPEKTHECSI CKAEFSSGQA LGGHMRRHRG
201: LNVNANATSI TKALLSSSHH QEPIRPKNFL ELDLNLPAPE DEPKFVFASK DQMLLFASAS NSLIDCHH
101: SLGLGLDGVY PCKTCDKSFH SFQALGGHRA SHKKSKRDEK NSASAVETVE SAETVGSFLS LQVTSSDGSK KPEKTHECSI CKAEFSSGQA LGGHMRRHRG
201: LNVNANATSI TKALLSSSHH QEPIRPKNFL ELDLNLPAPE DEPKFVFASK DQMLLFASAS NSLIDCHH
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.