Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04390.1 | KRG93437 | AT3G01320.1 | 19962994 |
| AT5G04390.1 | KRH18559 | AT3G01320.1 | 19962994 |
| AT5G04390.1 | KRH18561 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19960 | Soybean | nucleus | 86.24 | 89.24 |
| KRH67769 | Soybean | nucleus | 38.59 | 53.24 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 45.3 | 48.91 |
| CDY11027 | Canola | nucleus | 35.23 | 45.45 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 24.5 | 43.71 |
| KRH29844 | Soybean | nucleus, plastid | 20.81 | 43.06 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 11.07 | 42.86 |
| Bra009525.1-P | Field mustard | nucleus | 36.91 | 41.51 |
| CDY10376 | Canola | nucleus | 36.91 | 41.51 |
| KRG95848 | Soybean | nucleus | 23.49 | 40.94 |
| KRH19739 | Soybean | cytosol, nucleus | 21.81 | 40.88 |
| KRH32333 | Soybean | nucleus | 22.48 | 40.85 |
| CDX70302 | Canola | nucleus | 36.24 | 40.75 |
| PGSC0003DMT400009871 | Potato | nucleus | 40.6 | 40.6 |
| KRH67564 | Soybean | nucleus | 23.49 | 40.46 |
| KRH23029 | Soybean | nucleus | 23.15 | 40.35 |
| Bra028831.1-P | Field mustard | nucleus | 36.24 | 40.3 |
| CDX80870 | Canola | nucleus | 34.23 | 40.16 |
| Solyc09g008440.1.1 | Tomato | nucleus | 41.61 | 40.0 |
| CDY04886 | Canola | nucleus | 35.91 | 39.93 |
| CDY11255 | Canola | nucleus | 33.89 | 39.76 |
| KRH24840 | Soybean | nucleus | 20.81 | 39.74 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 21.14 | 39.62 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 23.15 | 39.43 |
| KRG90559 | Soybean | nucleus | 22.82 | 39.31 |
| CDY44371 | Canola | nucleus | 35.23 | 39.18 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.06 | 39.13 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 9.06 | 39.13 |
| KRH32335 | Soybean | nucleus | 23.49 | 39.11 |
| KRH19742 | Soybean | nucleus | 23.83 | 39.01 |
| KRH10294 | Soybean | nucleus | 22.48 | 38.95 |
| KRH70509 | Soybean | nucleus | 23.49 | 38.89 |
| Bra005766.1-P | Field mustard | nucleus | 35.91 | 38.77 |
| KRG95850 | Soybean | nucleus | 20.13 | 38.71 |
| AT5G03510.1 | Thale cress | nucleus | 37.58 | 38.36 |
| KRH67566 | Soybean | nucleus | 20.13 | 37.97 |
| KRG92135 | Soybean | nucleus | 41.61 | 37.92 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 8.72 | 37.68 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.72 | 37.68 |
| KRG96047 | Soybean | mitochondrion | 45.64 | 37.67 |
| KRH36195 | Soybean | extracellular | 23.15 | 37.3 |
| KRH19741 | Soybean | nucleus | 20.81 | 35.23 |
| KRH25111 | Soybean | nucleus, plastid | 36.91 | 34.92 |
| KRH30555 | Soybean | nucleus | 35.91 | 34.74 |
| Zm00001d036330_P001 | Maize | nucleus | 28.52 | 34.55 |
| KRH34655 | Soybean | nucleus | 40.94 | 34.27 |
| KRH26537 | Soybean | nucleus, plastid | 35.91 | 34.19 |
| CDY71034 | Canola | nucleus | 27.85 | 33.88 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.72 | 33.77 |
| CDY41350 | Canola | nucleus, plastid | 28.52 | 33.73 |
| KRH32334 | Soybean | nucleus | 20.47 | 33.7 |
| KRH22825 | Soybean | nucleus | 35.57 | 33.65 |
| KXG20985 | Sorghum | nucleus, plastid | 30.54 | 33.09 |
| CDY44852 | Canola | nucleus | 35.91 | 32.92 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.39 | 32.47 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.39 | 32.47 |
| CDX70228 | Canola | nucleus | 35.23 | 32.41 |
| CDY11288 | Canola | nucleus | 35.23 | 31.91 |
| CDY08602 | Canola | nucleus | 35.91 | 31.66 |
| Bra034116.1-P | Field mustard | plastid | 29.19 | 31.3 |
| CDY00945 | Canola | nucleus | 35.23 | 31.07 |
| CDY58436 | Canola | nucleus | 35.23 | 30.88 |
| Bra009457.1-P | Field mustard | nucleus | 35.23 | 30.43 |
| AT5G04390.1 | Thale cress | nucleus | 36.91 | 30.39 |
| CDY61764 | Canola | nucleus | 34.23 | 30.0 |
| Zm00001d051865_P001 | Maize | nucleus | 32.89 | 29.7 |
| Bra005803.1-P | Field mustard | nucleus | 35.23 | 29.25 |
| Zm00001d004439_P001 | Maize | nucleus | 35.23 | 29.25 |
| Bra029843.1-P | Field mustard | nucleus | 31.88 | 29.23 |
| Bra028791.1-P | Field mustard | nucleus | 34.23 | 28.98 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 33.22 | 28.78 |
| Os04t0162500-01 | Rice | vacuole | 27.85 | 28.72 |
| Zm00001d024866_P001 | Maize | nucleus | 34.9 | 28.42 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 32.55 | 28.36 |
| AT3G10470.1 | Thale cress | nucleus | 37.58 | 28.14 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 34.56 | 28.07 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 33.89 | 27.98 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 34.23 | 27.95 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 34.23 | 27.87 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 33.56 | 27.4 |
| CDX89591 | Canola | nucleus | 18.46 | 26.44 |
| EES10410 | Sorghum | nucleus | 35.57 | 26.43 |
| EES07783 | Sorghum | nucleus | 34.56 | 26.34 |
| CDY05027 | Canola | nucleus | 13.09 | 23.35 |
| CDY42128 | Canola | nucleus | 17.45 | 23.32 |
Protein Annotations
| EntrezGene:100785596 | MapMan:15.5.15 | EMBL:ACUP02006129 | EnsemblPlantsGene:GLYMA_10G059700 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 |
| UniProt:K7LHP2 | EnsemblPlants:KRH32562 | ProteinID:KRH32562 | ProteinID:KRH32562.1 | PFAM:PF13912 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000233CC8B |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:5514325..5515221
Molecular Weight (calculated)
32977.6 Da
IEP (calculated)
8.911
GRAVY (calculated)
-0.761
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVQEELLVV SKDHTQMMMV KGKRTKRQRA PSPLRLAMPY NSTSSNSSTN NSIDSATTSS PSPSPTNNTI EFREDQDMAN CLILLAQGRY HVAAPTPHHN
101: NNNNDDDNLK KSTSLYLYQC KTCNRCFPSF QALGGHRASH KKPKQNGTFS SEAVTNFIEE NNDRYDPTTS TTLSLKTPNG VSNLCGTITA TTTTTTTTKA
201: NKVHECSICG AEFSSGQALG GHMRRHRTLV NASMTTSMRG GNVVGSNEFQ EAKKPLKLDL NLPALPEDDH HRESKFSFQQ REKNVIVFSK SSLVDCHY
101: NNNNDDDNLK KSTSLYLYQC KTCNRCFPSF QALGGHRASH KKPKQNGTFS SEAVTNFIEE NNDRYDPTTS TTLSLKTPNG VSNLCGTITA TTTTTTTTKA
201: NKVHECSICG AEFSSGQALG GHMRRHRTLV NASMTTSMRG GNVVGSNEFQ EAKKPLKLDL NLPALPEDDH HRESKFSFQQ REKNVIVFSK SSLVDCHY
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.