Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44852 | Canola | nucleus | 73.48 | 81.85 |
| CDY61764 | Canola | nucleus | 76.24 | 81.18 |
| CDX70228 | Canola | nucleus | 72.38 | 80.86 |
| CDY71034 | Canola | nucleus | 54.14 | 80.0 |
| Bra009457.1-P | Field mustard | nucleus | 76.24 | 80.0 |
| CDY11288 | Canola | nucleus | 72.38 | 79.64 |
| Bra028791.1-P | Field mustard | nucleus | 77.35 | 79.55 |
| CDY58436 | Canola | nucleus | 74.03 | 78.82 |
| Bra005803.1-P | Field mustard | nucleus | 77.62 | 78.27 |
| CDX89591 | Canola | nucleus | 39.5 | 68.75 |
| CDY42128 | Canola | nucleus | 41.16 | 66.82 |
| AT3G10470.1 | Thale cress | nucleus | 70.72 | 64.32 |
| CDY05027 | Canola | nucleus | 23.76 | 51.5 |
| HORVU5Hr1G095320.1 | Barley | nucleus | 9.12 | 47.83 |
| HORVU3Hr1G057300.1 | Barley | nucleus | 9.12 | 47.83 |
| HORVU4Hr1G082500.1 | Barley | nucleus | 8.56 | 44.93 |
| VIT_08s0007g04770.t01 | Wine grape | nucleus | 34.25 | 44.93 |
| HORVU1Hr1G012760.1 | Barley | nucleus | 8.56 | 44.93 |
| KRH67769 | Soybean | nucleus | 25.97 | 43.52 |
| HORVU2Hr1G122100.1 | Barley | nucleus, plastid | 9.12 | 42.86 |
| HORVU1Hr1G020710.1 | Barley | nucleus | 8.84 | 41.56 |
| GSMUA_Achr1P03310_001 | Banana | nucleus | 19.06 | 41.32 |
| PGSC0003DMT400009871 | Potato | nucleus | 33.43 | 40.6 |
| HORVU5Hr1G095330.1 | Barley | nucleus | 8.56 | 40.26 |
| HORVU5Hr1G095390.1 | Barley | nucleus | 8.56 | 40.26 |
| AT2G28200.1 | Thale cress | nucleus | 30.94 | 39.16 |
| AT2G28710.1 | Thale cress | nucleus | 16.57 | 38.46 |
| Solyc09g008440.1.1 | Tomato | nucleus | 32.87 | 38.39 |
| KRH19960 | Soybean | nucleus | 30.39 | 38.19 |
| AT5G03510.1 | Thale cress | nucleus | 30.66 | 38.01 |
| AT2G37430.1 | Thale cress | nucleus | 18.51 | 37.64 |
| KRH32562 | Soybean | nucleus | 30.39 | 36.91 |
| AT5G59820.1 | Thale cress | nucleus | 15.47 | 34.57 |
| Zm00001d036330_P001 | Maize | nucleus | 23.48 | 34.55 |
| AT3G46080.1 | Thale cress | nucleus | 15.47 | 34.15 |
| KXG20985 | Sorghum | nucleus, plastid | 25.69 | 33.82 |
| AT3G53600.1 | Thale cress | nucleus | 16.02 | 33.14 |
| AT3G46070.1 | Thale cress | nucleus | 15.19 | 32.35 |
| AT3G46090.1 | Thale cress | nucleus | 14.92 | 32.14 |
| Zm00001d051865_P001 | Maize | nucleus | 29.01 | 31.82 |
| KRG96047 | Soybean | mitochondrion | 31.49 | 31.58 |
| TraesCS6A01G404600.1 | Wheat | nucleus | 30.94 | 30.52 |
| HORVU6Hr1G092750.1 | Barley | nucleus | 30.11 | 30.19 |
| TraesCS6B01G448900.1 | Wheat | nucleus | 30.39 | 30.14 |
| Os04t0162500-01 | Rice | vacuole | 24.03 | 30.1 |
| Zm00001d004439_P001 | Maize | nucleus | 29.83 | 30.08 |
| Os02t0823900-00 | Rice | cytosol, nucleus, peroxisome | 28.45 | 29.94 |
| TraesCS6D01G387900.1 | Wheat | nucleus | 30.11 | 29.78 |
| Zm00001d024866_P001 | Maize | nucleus | 29.56 | 29.23 |
| TraesCS2A01G002400.1 | Wheat | nucleus | 26.24 | 27.78 |
| EES07783 | Sorghum | nucleus | 29.56 | 27.37 |
| EES10410 | Sorghum | nucleus | 30.11 | 27.18 |
| TraesCS2B01G020300.1 | Wheat | nucleus | 26.8 | 26.58 |
Protein Annotations
| MapMan:15.5.15 | EntrezGene:830318 | ProteinID:AED90737.1 | ArrayExpress:AT5G04390 | EnsemblPlantsGene:AT5G04390 | RefSeq:AT5G04390 |
| TAIR:AT5G04390 | RefSeq:AT5G04390-TAIR-G | EnsemblPlants:AT5G04390.1 | TAIR:AT5G04390.1 | EMBL:BT003885 | EMBL:BT005031 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008150 | InterPro:IPR013087 | RefSeq:NP_196059.1 | PFAM:PF13912 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF325 | UniProt:Q84K31 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000000C1C1 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
Coordinates
chr5:+:1238820..1240517
Molecular Weight (calculated)
39796.2 Da
IEP (calculated)
7.946
GRAVY (calculated)
-0.738
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.