Factsheet for Bra028791.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra040510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04390.1	Bra040510.1-P	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61764	Canola	nucleus	94.03	97.35
CDY71034	Canola	nucleus	64.77	93.06
Bra009457.1-P	Field mustard	nucleus	76.99	78.55
CDX89591	Canola	nucleus	46.31	78.37
Bra005803.1-P	Field mustard	nucleus	79.55	77.99
AT5G04390.1	Thale cress	nucleus	79.55	77.35
CDY42128	Canola	nucleus	48.58	76.68
Bra034116.1-P	Field mustard	plastid	48.58	61.51
Bra029843.1-P	Field mustard	nucleus	56.25	60.92
CDY05027	Canola	nucleus	26.99	56.89
Bra020284.1-P	Field mustard	nucleus	13.64	42.86
HORVU5Hr1G095320.1	Barley	nucleus	8.24	42.03
HORVU4Hr1G082500.1	Barley	nucleus	8.24	42.03
HORVU3Hr1G057300.1	Barley	nucleus	8.24	42.03
VIT_08s0007g04770.t01	Wine grape	nucleus	32.39	41.3
Bra028831.1-P	Field mustard	nucleus	30.11	39.55
Bra009525.1-P	Field mustard	nucleus	29.55	39.25
HORVU1Hr1G012760.1	Barley	nucleus	7.67	39.13
HORVU2Hr1G122100.1	Barley	nucleus, plastid	8.52	38.96
Bra011931.1-P	Field mustard	cytosol	16.48	38.67
KRH67769	Soybean	nucleus	23.58	38.43
Bra035678.1-P	Field mustard	nucleus	15.91	37.84
HORVU1Hr1G020710.1	Barley	nucleus	8.24	37.66
PGSC0003DMT400009871	Potato	nucleus	31.53	37.25
Bra005197.1-P	Field mustard	nucleus	17.61	37.13
Bra011970.1-P	Field mustard	nucleus	30.11	36.81
Bra005766.1-P	Field mustard	nucleus	28.69	36.59
HORVU5Hr1G095390.1	Barley	nucleus	7.95	36.36
HORVU5Hr1G095330.1	Barley	nucleus	7.95	36.36
Bra034396.1-P	Field mustard	nucleus	29.83	35.96
GSMUA_Achr1P03310_001	Banana	nucleus	17.05	35.93
Bra030981.1-P	Field mustard	nucleus	18.47	35.91
Bra006692.1-P	Field mustard	nucleus	16.19	35.85
Bra006691.1-P	Field mustard	nucleus	16.19	35.85
KRH19960	Soybean	nucleus	29.26	35.76
Bra039806.1-P	Field mustard	nucleus	17.61	35.63
Bra002528.1-P	Field mustard	nucleus	16.19	35.62
Solyc09g008440.1.1	Tomato	nucleus	31.25	35.48
Bra003148.1-P	Field mustard	nucleus	16.76	35.12
Bra017188.1-P	Field mustard	nucleus	17.9	35.0
KRH32562	Soybean	nucleus	28.98	34.23
Bra019477.1-P	Field mustard	nucleus	16.19	33.53
Zm00001d036330_P001	Maize	nucleus	23.01	32.93
KXG20985	Sorghum	nucleus, plastid	24.15	30.91
Bra018225.1-P	Field mustard	nucleus	16.48	30.21
Bra019476.1-P	Field mustard	nucleus	14.49	30.18
KRG96047	Soybean	mitochondrion	29.55	28.81
Zm00001d051865_P001	Maize	nucleus	26.99	28.79
Zm00001d004439_P001	Maize	nucleus	29.26	28.69
TraesCS6A01G404600.1	Wheat	nucleus	29.55	28.34
HORVU6Hr1G092750.1	Barley	nucleus	28.98	28.25
Os04t0162500-01	Rice	vacuole	23.01	28.03
TraesCS6D01G387900.1	Wheat	nucleus	28.98	27.87
TraesCS6B01G448900.1	Wheat	nucleus	28.69	27.67
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	26.7	27.33
Zm00001d024866_P001	Maize	nucleus	28.41	27.32
TraesCS2A01G002400.1	Wheat	nucleus	26.14	26.9
EES10410	Sorghum	nucleus	29.83	26.18
TraesCS2B01G020300.1	Wheat	nucleus	26.7	25.75
EES07783	Sorghum	nucleus	27.27	24.55

Protein Annotations

EnsemblPlants:Bra028791.1	EnsemblPlants:Bra028791.1-P	EnsemblPlantsGene:Bra028791	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF325	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00025430A1
UniProt:M4EJ26	MapMan:15.5.15	:	:	:	:

Description

AT5G04390 (E=2e-098) | zinc finger (C2H2 type) family protein

Coordinates

chrA02:+:2036456..2037514

Molecular Weight (calculated)

38892.5 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.668

Length

352 amino acids

Sequence
(BLAST)

001: MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PVPFSSSPPI VSCHAHDIEE EYTDLDSKEN ALGNNVENHK KDGVITSSSS SASWSSNNNP TLKAEEDEED
101: LDIASCLILL SRGHSLPQLK IPNHETTYNN KTYKFSSRRF LETSSSNGGG KAGYYVYQCK TCDRTFSSFQ ALGGHRASHK KPKATSFYSN LEHLKKNIYE
201: NDSLATTTTI YNNNKNRSLV VYGKAGNNKV HKCGICGAEF TSGQALGGHM RRHRGAVVVA PTVTVALAAA NTELSLSSMS FDQISTKRAK KMVVSLDLDL
301: NLPALELEDE NMVNGFSLGF KQKHEQEHQQ TKQRDEPKCL VLSPPTSVDC HY

Best Arabidopsis Sequence Match ( AT5G04390.1 )
(BLAST)

001: MEAFEEATKE QSLILKGKRT KRQRPQSPIP FSISPPIVST PENNMEEEYT DLDSKDNALG NDEGNHKKDG VITSSSSSAS WSSQNNHTLK AAEDEEDQDI
101: ANCLILLAQG HSLPHNNHHL PNSNNNNTYR FTSRRFLETS SSNSGGKAGY YVYQCKTCDR TFPSFQALGG HRASHKKPKA ASFYSNLDLK KNTYANDAVS
201: LVHTTTTVFK NNNSRSLVVY GKASKNKVHE CGICGAEFTS GQALGGHMRR HRGAVVVPAV IAPTVTVATA AANTELSLSS MSFDQISDGH QDHLAMPAKK
301: KARTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC HY

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.