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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31593 Canola nucleus 98.75 98.75
AT5G59820.1 Thale cress nucleus 85.0 83.95
Bra006691.1-P Field mustard nucleus 83.12 83.65
Bra006692.1-P Field mustard nucleus 83.12 83.65
Bra020284.1-P Field mustard nucleus 58.12 83.04
Bra019477.1-P Field mustard nucleus 65.0 61.18
Bra018225.1-P Field mustard nucleus 61.25 51.04
Bra019476.1-P Field mustard nucleus 53.12 50.3
Bra035678.1-P Field mustard nucleus 39.38 42.57
Bra011931.1-P Field mustard cytosol 39.38 42.0
KRH29844 Soybean nucleus, plastid 36.88 40.97
Solyc06g075780.1.1 Tomato nucleus 38.75 40.26
PGSC0003DMT400040144 Potato nucleus 41.25 40.0
PGSC0003DMT400040143 Potato nucleus 41.25 39.76
KRH24840 Soybean nucleus 37.5 38.46
Solyc11g073060.1.1 Tomato nucleus 36.88 38.31
PGSC0003DMT400040141 Potato nucleus 40.62 38.24
PGSC0003DMT400040206 Potato nucleus 40.62 38.01
PGSC0003DMT400040142 Potato nucleus 38.75 37.58
KRH23029 Soybean nucleus 40.0 37.43
PGSC0003DMT400077934 Potato cytosol, nucleus, plastid 38.12 37.2
KRH10294 Soybean nucleus 39.38 36.63
PGSC0003DMT400040207 Potato nucleus 37.5 36.59
Bra017188.1-P Field mustard nucleus 40.0 35.56
Bra005197.1-P Field mustard nucleus 36.88 35.33
Bra003148.1-P Field mustard nucleus 35.0 33.33
Bra030981.1-P Field mustard nucleus 36.88 32.6
Bra039806.1-P Field mustard nucleus 33.75 31.03
Bra009525.1-P Field mustard nucleus 35.0 21.13
Bra005766.1-P Field mustard nucleus 36.25 21.01
Bra028831.1-P Field mustard nucleus 35.0 20.9
Bra034116.1-P Field mustard plastid 35.62 20.5
Bra011970.1-P Field mustard nucleus 35.62 19.79
Bra034396.1-P Field mustard nucleus 33.75 18.49
Bra029843.1-P Field mustard nucleus 35.62 17.54
Bra028791.1-P Field mustard nucleus 35.62 16.19
Bra005803.1-P Field mustard nucleus 36.25 16.16
Bra009457.1-P Field mustard nucleus 33.75 15.65
Protein Annotations
EnsemblPlants:Bra002528.1EnsemblPlants:Bra002528.1-PEnsemblPlantsGene:Bra002528Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF318
PFAM:PF13912PFscan:PS50157ScanProsite:PS00028SMART:SM00355SUPFAM:SSF57667UniParc:UPI0002543D00
UniProt:M4CE97MapMan:15.5.15::::
Description
AT5G59820 (E=5e-070) RHL41, ZAT12 | RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding
Coordinates
chrA10:+:9046551..9047033
Molecular Weight (calculated)
17143.9 Da
IEP (calculated)
9.560
GRAVY (calculated)
-0.172
Length
160 amino acids
Sequence
(BLAST)
001: MVAISEIKST VETTAANCLM LLSRVGQENV DGGSAKRVFT CKTCLKEFLS FQAWGGHRAS HKKPNNENLS SLMKKTKASS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGG AGALVTRELL SEAALTTLKK SSSGRLACLD LSLGMVENLN LKLELGRPVC
Best Arabidopsis Sequence Match ( AT5G59820.1 )
(BLAST)
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.