Factsheet for Bra035678.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31725	Canola	nucleus	100.0	100.0
CDX77198	Canola	nucleus	98.65	98.65
Bra011931.1-P	Field mustard	cytosol	92.57	91.33
AT2G28710.1	Thale cress	nucleus	90.54	85.9
Bra020284.1-P	Field mustard	nucleus	33.78	44.64
Bra006691.1-P	Field mustard	nucleus	45.27	42.14
Bra006692.1-P	Field mustard	nucleus	45.27	42.14
PGSC0003DMT400077933	Potato	nucleus	41.89	39.49
Bra002528.1-P	Field mustard	nucleus	42.57	39.38
Bra019477.1-P	Field mustard	nucleus	42.57	37.06
Bra005197.1-P	Field mustard	nucleus	40.54	35.93
Bra017188.1-P	Field mustard	nucleus	43.24	35.56
Bra003148.1-P	Field mustard	nucleus	39.19	34.52
Bra018225.1-P	Field mustard	nucleus	43.92	33.85
Bra030981.1-P	Field mustard	nucleus	41.22	33.7
PGSC0003DMT400090011	Potato	nucleus	34.46	32.9
Bra039806.1-P	Field mustard	nucleus	37.84	32.18
GSMUA_Achr8P02630_001	Banana	nucleus	21.62	32.0
GSMUA_Achr6P34280_001	Banana	cytosol, mitochondrion, nucleus	23.65	31.82
Bra019476.1-P	Field mustard	nucleus	35.14	30.77
Solyc03g093870.1.1	Tomato	nucleus	35.81	30.46
PGSC0003DMT400021456	Potato	nucleus	37.16	28.65
Bra028831.1-P	Field mustard	nucleus	39.19	21.64
Bra009525.1-P	Field mustard	nucleus	37.84	21.13
Bra011970.1-P	Field mustard	nucleus	40.54	20.83
Bra034116.1-P	Field mustard	plastid	38.51	20.5
Bra005766.1-P	Field mustard	nucleus	37.84	20.29
Bra034396.1-P	Field mustard	nucleus	39.86	20.21
Bra029843.1-P	Field mustard	nucleus	38.51	17.54
Bra005803.1-P	Field mustard	nucleus	39.86	16.43
Bra009457.1-P	Field mustard	nucleus	37.16	15.94
Bra028791.1-P	Field mustard	nucleus	37.84	15.91

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EnsemblPlantsGene:Bra035678	EnsemblPlants:Bra035678.1	EnsemblPlants:Bra035678.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:M4F3M8	PFAM:PF13912	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000254403E
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

AT2G28710 (E=2e-061) | zinc finger (C2H2 type) family protein

Coordinates

chrA04:+:12897626..12898072

Molecular Weight (calculated)

16029.6 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.541

Length

148 amino acids

Sequence
(BLAST)

001: MEKEREIEMI NKMASCLIYL SKAHQHDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR
101: GGGGSRSLAP APVTMKKSGG GNGKRVLCMD LNLTPGENDD LKLELGML

Best Arabidopsis Sequence Match ( AT2G28710.1 )
(BLAST)

001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF

Arabidopsis Description

At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.