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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30925 Canola nucleus 97.04 97.04
CDY58688 Canola nucleus 42.6 80.9
Bra019477.1-P Field mustard nucleus 65.09 64.71
Bra020284.1-P Field mustard nucleus 40.24 60.71
Bra018225.1-P Field mustard nucleus 65.68 57.81
Bra006691.1-P Field mustard nucleus 53.25 56.6
Bra006692.1-P Field mustard nucleus 53.25 56.6
AT3G46070.1 Thale cress nucleus 54.44 54.12
Bra002528.1-P Field mustard nucleus 50.3 53.12
Solyc11g073060.1.1 Tomato nucleus 34.32 37.66
Bra011931.1-P Field mustard cytosol 32.54 36.67
PGSC0003DMT400040207 Potato nucleus 35.5 36.59
PGSC0003DMT400040143 Potato nucleus 35.5 36.14
PGSC0003DMT400040142 Potato nucleus 34.91 35.76
PGSC0003DMT400040144 Potato nucleus 34.91 35.76
Bra035678.1-P Field mustard nucleus 30.77 35.14
Solyc06g075780.1.1 Tomato nucleus 31.95 35.06
KRH29844 Soybean nucleus, plastid 29.59 34.72
PGSC0003DMT400040141 Potato nucleus 34.91 34.71
KRH24840 Soybean nucleus 31.95 34.62
PGSC0003DMT400040206 Potato nucleus 34.91 34.5
KRH10294 Soybean nucleus 34.32 33.72
PGSC0003DMT400077934 Potato cytosol, nucleus, plastid 32.54 33.54
Bra005197.1-P Field mustard nucleus 33.14 33.53
Bra017188.1-P Field mustard nucleus 35.5 33.33
KRH23029 Soybean nucleus 33.73 33.33
Bra003148.1-P Field mustard nucleus 30.77 30.95
Bra030981.1-P Field mustard nucleus 32.54 30.39
Bra039806.1-P Field mustard nucleus 27.81 27.01
Bra009525.1-P Field mustard nucleus 29.59 18.87
Bra028831.1-P Field mustard nucleus 29.59 18.66
Bra005766.1-P Field mustard nucleus 30.18 18.48
Bra011970.1-P Field mustard nucleus 28.99 17.01
Bra034116.1-P Field mustard plastid 27.81 16.91
Bra034396.1-P Field mustard nucleus 28.4 16.44
Bra029843.1-P Field mustard nucleus 28.4 14.77
Bra028791.1-P Field mustard nucleus 30.18 14.49
Bra005803.1-P Field mustard nucleus 30.18 14.21
Bra009457.1-P Field mustard nucleus 27.81 13.62
Protein Annotations
EnsemblPlants:Bra019476.1EnsemblPlants:Bra019476.1-PEnsemblPlantsGene:Bra019476Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF318
PFAM:PF13912PFscan:PS50157ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667
UniParc:UPI000253F0F7UniProt:M4DSI3MapMan:15.5.15:::
Description
AT3G46080 (E=2e-043) | zinc finger (C2H2 type) family protein
Coordinates
chrA06:+:13161765..13162274
Molecular Weight (calculated)
18742.6 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.470
Length
169 amino acids
Sequence
(BLAST)
001: MVARSESFDR TVEDTTTNCL MLLSRVGECG GGDVEGRVFR CKTCMKEFSS FHALGVHRVS HKKPVSNSSG EEQLGIFIKK KTKKTGWHHR CSICGLEFEM
101: GQALGGHMRK HWNKEDSGGA LITHSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRTMY
Best Arabidopsis Sequence Match ( AT3G46080.1 )
(BLAST)
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Arabidopsis Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.