Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY30925 | Canola | nucleus | 97.04 | 97.04 |
CDY58688 | Canola | nucleus | 42.6 | 80.9 |
Bra019477.1-P | Field mustard | nucleus | 65.09 | 64.71 |
Bra020284.1-P | Field mustard | nucleus | 40.24 | 60.71 |
Bra018225.1-P | Field mustard | nucleus | 65.68 | 57.81 |
Bra006691.1-P | Field mustard | nucleus | 53.25 | 56.6 |
Bra006692.1-P | Field mustard | nucleus | 53.25 | 56.6 |
AT3G46070.1 | Thale cress | nucleus | 54.44 | 54.12 |
Bra002528.1-P | Field mustard | nucleus | 50.3 | 53.12 |
Solyc11g073060.1.1 | Tomato | nucleus | 34.32 | 37.66 |
Bra011931.1-P | Field mustard | cytosol | 32.54 | 36.67 |
PGSC0003DMT400040207 | Potato | nucleus | 35.5 | 36.59 |
PGSC0003DMT400040143 | Potato | nucleus | 35.5 | 36.14 |
PGSC0003DMT400040142 | Potato | nucleus | 34.91 | 35.76 |
PGSC0003DMT400040144 | Potato | nucleus | 34.91 | 35.76 |
Bra035678.1-P | Field mustard | nucleus | 30.77 | 35.14 |
Solyc06g075780.1.1 | Tomato | nucleus | 31.95 | 35.06 |
KRH29844 | Soybean | nucleus, plastid | 29.59 | 34.72 |
PGSC0003DMT400040141 | Potato | nucleus | 34.91 | 34.71 |
KRH24840 | Soybean | nucleus | 31.95 | 34.62 |
PGSC0003DMT400040206 | Potato | nucleus | 34.91 | 34.5 |
KRH10294 | Soybean | nucleus | 34.32 | 33.72 |
PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 32.54 | 33.54 |
Bra005197.1-P | Field mustard | nucleus | 33.14 | 33.53 |
Bra017188.1-P | Field mustard | nucleus | 35.5 | 33.33 |
KRH23029 | Soybean | nucleus | 33.73 | 33.33 |
Bra003148.1-P | Field mustard | nucleus | 30.77 | 30.95 |
Bra030981.1-P | Field mustard | nucleus | 32.54 | 30.39 |
Bra039806.1-P | Field mustard | nucleus | 27.81 | 27.01 |
Bra009525.1-P | Field mustard | nucleus | 29.59 | 18.87 |
Bra028831.1-P | Field mustard | nucleus | 29.59 | 18.66 |
Bra005766.1-P | Field mustard | nucleus | 30.18 | 18.48 |
Bra011970.1-P | Field mustard | nucleus | 28.99 | 17.01 |
Bra034116.1-P | Field mustard | plastid | 27.81 | 16.91 |
Bra034396.1-P | Field mustard | nucleus | 28.4 | 16.44 |
Bra029843.1-P | Field mustard | nucleus | 28.4 | 14.77 |
Bra028791.1-P | Field mustard | nucleus | 30.18 | 14.49 |
Bra005803.1-P | Field mustard | nucleus | 30.18 | 14.21 |
Bra009457.1-P | Field mustard | nucleus | 27.81 | 13.62 |
Protein Annotations
EnsemblPlants:Bra019476.1 | EnsemblPlants:Bra019476.1-P | EnsemblPlantsGene:Bra019476 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF318 |
PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
UniParc:UPI000253F0F7 | UniProt:M4DSI3 | MapMan:15.5.15 | : | : | : |
Description
AT3G46080 (E=2e-043) | zinc finger (C2H2 type) family protein
Coordinates
chrA06:+:13161765..13162274
Molecular Weight (calculated)
18742.6 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.470
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARSESFDR TVEDTTTNCL MLLSRVGECG GGDVEGRVFR CKTCMKEFSS FHALGVHRVS HKKPVSNSSG EEQLGIFIKK KTKKTGWHHR CSICGLEFEM
101: GQALGGHMRK HWNKEDSGGA LITHSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRTMY
101: GQALGGHMRK HWNKEDSGGA LITHSFFPEA AMTRTLKETS KEKGVACLEP GSDSIEGINL KLELGRTMY
001: MVARSEEVEI VEDTAAKCLM LLSRVGECGG GGEKRVFRCK TCLKEFSSFQ ALGGHRASHK KLINSSDPSL LGSLSNKKTK TATSHPCPIC GVEFPMGQAL
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
101: GGHMRRHRSE KASPGTLVTR SFLPETTTVT TLKKSSSGKR VACLDLDSME SLVNWKLELG RTIS
Arabidopsis Description
ZAT8Zinc finger protein ZAT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX85]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.