Factsheet for Bra009525.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70302	Canola	nucleus	96.98	96.98
CDY11027	Canola	nucleus	84.15	96.54
Bra028831.1-P	Field mustard	nucleus	83.02	82.09
Bra005766.1-P	Field mustard	nucleus	82.26	78.99
AT5G03510.1	Thale cress	nucleus	83.02	75.34
Bra020284.1-P	Field mustard	nucleus	18.49	43.75
VIT_08s0007g04770.t01	Wine grape	nucleus	45.28	43.48
KRH67769	Soybean	nucleus	33.21	40.74
HORVU2Hr1G122100.1	Barley	nucleus, plastid	11.32	38.96
Bra011931.1-P	Field mustard	cytosol	21.89	38.67
Bra005197.1-P	Field mustard	nucleus	24.15	38.32
GSMUA_Achr1P03310_001	Banana	nucleus	24.15	38.32
KRH19960	Soybean	nucleus	41.51	38.19
Bra035678.1-P	Field mustard	nucleus	21.13	37.84
KRH32562	Soybean	nucleus	41.51	36.91
PGSC0003DMT400009871	Potato	nucleus	41.51	36.91
Bra017188.1-P	Field mustard	nucleus	24.91	36.67
Bra006692.1-P	Field mustard	nucleus	21.89	36.48
Bra006691.1-P	Field mustard	nucleus	21.89	36.48
Solyc09g008440.1.1	Tomato	nucleus	41.51	35.48
Bra039806.1-P	Field mustard	nucleus	23.02	35.06
Bra002528.1-P	Field mustard	nucleus	21.13	35.0
Bra030981.1-P	Field mustard	nucleus	23.77	34.81
Bra003148.1-P	Field mustard	nucleus	21.89	34.52
Bra011970.1-P	Field mustard	nucleus	37.36	34.38
Bra034396.1-P	Field mustard	nucleus	36.98	33.56
HORVU3Hr1G057300.1	Barley	nucleus	8.68	33.33
HORVU4Hr1G082500.1	Barley	nucleus	8.68	33.33
HORVU5Hr1G095320.1	Barley	nucleus	8.68	33.33
Bra019477.1-P	Field mustard	nucleus	20.75	32.35
Zm00001d036330_P001	Maize	nucleus	29.81	32.11
HORVU1Hr1G012760.1	Barley	nucleus	8.3	31.88
KXG20985	Sorghum	nucleus, plastid	32.45	31.27
Bra009457.1-P	Field mustard	nucleus	40.38	31.01
HORVU1Hr1G020710.1	Barley	nucleus	8.68	29.87
Bra034116.1-P	Field mustard	plastid	31.32	29.86
Bra019476.1-P	Field mustard	nucleus	18.87	29.59
Bra028791.1-P	Field mustard	nucleus	39.25	29.55
Zm00001d004439_P001	Maize	nucleus	40.0	29.53
Bra005803.1-P	Field mustard	nucleus	39.62	29.25
KRG96047	Soybean	mitochondrion	39.62	29.09
HORVU5Hr1G095390.1	Barley	nucleus	8.3	28.57
HORVU5Hr1G095330.1	Barley	nucleus	8.3	28.57
Bra018225.1-P	Field mustard	nucleus	20.38	28.12
Bra029843.1-P	Field mustard	nucleus	33.96	27.69
Os04t0162500-01	Rice	vacuole	30.19	27.68
TraesCS2A01G002400.1	Wheat	nucleus	35.47	27.49
Zm00001d051865_P001	Maize	nucleus	33.58	26.97
Zm00001d024866_P001	Maize	nucleus	36.98	26.78
Os02t0823900-00	Rice	cytosol, nucleus, peroxisome	33.58	25.87
TraesCS2B01G020300.1	Wheat	nucleus	35.09	25.48
EES10410	Sorghum	nucleus	37.74	24.94
TraesCS6D01G387900.1	Wheat	nucleus	34.34	24.86
TraesCS6B01G448900.1	Wheat	nucleus	33.96	24.66
HORVU6Hr1G092750.1	Barley	nucleus	33.58	24.65
TraesCS6A01G404600.1	Wheat	nucleus	33.96	24.52
EES07783	Sorghum	nucleus	33.21	22.51

Protein Annotations

EnsemblPlants:Bra009525.1	EnsemblPlants:Bra009525.1-P	EnsemblPlantsGene:Bra009525	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF318	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002547B54	UniProt:M4CZ78
MapMan:15.5.15	:	:	:	:	:

Description

AT5G03510 (E=1e-100) | zinc finger (C2H2 type) family protein

Coordinates

chrA10:-:17085202..17085999

Molecular Weight (calculated)

28832.0 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.570

Length

265 amino acids

Sequence
(BLAST)

001: MTSVHEEMRH VLLIKGKRTK RQRSASPHMN AEAVSGVCSE EPSLEAREEG AGEVEFQGAT EEDQDMANCL MLLSQGHKAN GSGDHSSTHK LDFLCNKKPV
101: ASLGLGLEGV YQCQTCDKSF HSFQALGGHR ASHKKPKLGA IVLKCHEKKS SSASAVETAK GSFLSLQVTS SDGNKKPEKT HECSICKAEF SSGQALGGHM
201: RRHRGLIVNA NATSSHHQES IRPKNYLELD LNLPAPEDES KFVFASKDQI ILFTTASNSL IDCHH

Best Arabidopsis Sequence Match ( AT5G03510.1 )
(BLAST)

001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH

Arabidopsis Description

C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.