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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g067570.2.1
Solyc02g087360.2.1
Solyc02g087370.1.1
Solyc02g087380.1.1
Solyc02g087390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G04390.1 Solyc02g067570.2.1 AT3G01320.1 19962994
AT5G04390.1 Solyc02g087360.2.1 AT3G01320.1 19962994
AT5G04390.1 Solyc02g087370.1.1 AT3G01320.1 19962994
AT5G04390.1 Solyc02g087380.1.1 AT3G01320.1 19962994
AT5G04390.1 Solyc02g087390.1.1 AT3G01320.1 19962994
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400009871 Potato nucleus 89.03 92.62
VIT_08s0007g04770.t01 Wine grape nucleus 43.87 49.28
KRH67769 Soybean nucleus 33.55 48.15
Solyc05g054650.1.1 Tomato plastid 21.94 44.74
CDY11027 Canola nucleus 33.23 44.59
GSMUA_Achr1P03310_001 Banana nucleus 23.55 43.71
KRH19960 Soybean nucleus 40.32 43.4
Bra028831.1-P Field mustard nucleus 36.13 41.79
CDY04886 Canola nucleus 36.13 41.79
KRH32562 Soybean nucleus 40.0 41.61
Solyc11g073060.1.1 Tomato nucleus 20.65 41.56
Bra009525.1-P Field mustard nucleus 35.48 41.51
CDX70302 Canola nucleus 35.48 41.51
CDY44371 Canola nucleus 35.81 41.42
CDY10376 Canola nucleus 35.16 41.13
Solyc06g075780.1.1 Tomato nucleus 20.32 40.91
CDY11255 Canola nucleus 33.23 40.55
HORVU2Hr1G122100.1 Barley nucleus, plastid 10.0 40.26
CDX80870 Canola nucleus 32.9 40.16
Solyc05g054660.1.1 Tomato nucleus, plastid 21.61 40.12
AT5G03510.1 Thale cress nucleus 37.42 39.73
Bra005766.1-P Field mustard nucleus 34.84 39.13
Solyc11g066400.1.1 Tomato nucleus, plastid 36.13 38.1
CDY71034 Canola nucleus 29.35 37.14
CDY41350 Canola nucleus, plastid 29.68 36.51
HORVU5Hr1G095320.1 Barley nucleus 8.06 36.23
HORVU4Hr1G082500.1 Barley nucleus 8.06 36.23
HORVU3Hr1G057300.1 Barley nucleus 8.06 36.23
Solyc06g074800.1.1 Tomato nucleus 37.74 35.89
Zm00001d036330_P001 Maize nucleus 28.39 35.77
Bra034116.1-P Field mustard plastid 31.61 35.25
HORVU1Hr1G012760.1 Barley nucleus 7.74 34.78
KRG96047 Soybean mitochondrion 40.0 34.35
CDY44852 Canola nucleus 35.81 34.15
CDX70228 Canola nucleus 35.48 33.95
KXG20985 Sorghum nucleus, plastid 29.68 33.45
CDY58436 Canola nucleus 36.13 32.94
AT5G04390.1 Thale cress nucleus 38.39 32.87
CDY08602 Canola nucleus 35.81 32.84
CDY11288 Canola nucleus 34.84 32.83
CDY61764 Canola nucleus 35.81 32.65
Bra009457.1-P Field mustard nucleus 36.13 32.46
Bra029843.1-P Field mustard nucleus 33.87 32.31
CDY00945 Canola nucleus 35.16 32.25
Os04t0162500-01 Rice vacuole 29.68 31.83
Os02t0823900-00 Rice cytosol, nucleus, peroxisome 35.16 31.69
Bra028791.1-P Field mustard nucleus 35.48 31.25
Bra005803.1-P Field mustard nucleus 36.13 31.2
Zm00001d051865_P001 Maize nucleus 32.9 30.91
AT3G10470.1 Thale cress nucleus 39.35 30.65
HORVU6Hr1G092750.1 Barley nucleus 35.48 30.47
TraesCS2A01G002400.1 Wheat nucleus 33.23 30.12
HORVU5Hr1G095330.1 Barley nucleus 7.42 29.87
HORVU1Hr1G020710.1 Barley nucleus 7.42 29.87
HORVU5Hr1G095390.1 Barley nucleus 7.42 29.87
Solyc05g055500.1.1 Tomato nucleus 34.84 29.83
TraesCS6B01G448900.1 Wheat nucleus 34.84 29.59
Zm00001d004439_P001 Maize nucleus 34.19 29.53
TraesCS6D01G387900.1 Wheat nucleus 34.84 29.51
TraesCS6A01G404600.1 Wheat nucleus 34.52 29.16
Zm00001d024866_P001 Maize nucleus 33.87 28.69
TraesCS2B01G020300.1 Wheat nucleus 32.58 27.67
Solyc03g093870.1.1 Tomato nucleus 15.48 27.59
EES07783 Sorghum nucleus 33.55 26.6
CDX89591 Canola nucleus 17.74 26.44
EES10410 Sorghum nucleus 33.87 26.18
CDY05027 Canola nucleus 13.87 25.75
CDY42128 Canola nucleus 18.06 25.11
Protein Annotations
EnsemblPlants:Solyc09g008440.1.1EnsemblPlantsGene:Solyc09g008440.1GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_type
PANTHER:PTHR26374PANTHER:PTHR26374:SF329PFAM:PF13912PFscan:PS50157ScanProsite:PS00028SEG:seg
SMART:SM00355SUPFAM:SSF57667UniParc:UPI000276BEF8UniProt:K4CQN2MapMan:15.5.15:
Description
No Description!
Coordinates
chr9:+:1894187..1895119
Molecular Weight (calculated)
34953.9 Da
IEP (calculated)
8.165
GRAVY (calculated)
-0.884
Length
310 amino acids
Sequence
(BLAST)
001: MIKIKKCYTM EVHDDRGCDQ DQQLNMVIKR RRTKRPRPPS PLTLGITTSS CSTVEGASSG ELVDGHVANS LLRSNNCGGM IDDKIVRNTN QEEEDMANCL
101: ILLAQGHNFQ KSSSLSQSPT LDVYQCKTCN RSFPSFQALG GHRASHKKPK TLEDQIKNLK SNDHHHHQQA ENNIRLKLNN NDDHVTTLSL QIPNNSNNNS
201: NNKNKNRVHE CSICGAEFNS GQALGGHMRR HRPLPNSIAI TSNHHIHEES HHHHHHDQQI IKNNTRAFLS LDLNLPAPED DHRPENSKFT FATKEQVIVF
301: SASSLVDCHY
Best Arabidopsis Sequence Match ( AT5G03510.1 )
(BLAST)
001: MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNAAAVS SVCSGERSSV EVREEEAAGE VEFQGATDED EDMANCLILL SQGHQAKSSD DHLSMQRMGF
101: FSNKKPVASL GLGLDGVYQC KTCDKSFHSF QALGGHRASH KKPKLGASVF KCVEKKTASA STVETVEAGA VGSFLSLQVT SSDGSKKPEK THECSICKAE
201: FSSGQALGGH MRRHRGLTIN ANATSAIKTA ISSSSHHHHE ESIRPKNFLQ LDLNLPAPED ERCCEKPKFA FASKDQILLF TAASNSLIDC HH
Arabidopsis Description
C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LZD5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.