Factsheet for Solyc02g087370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g011650.2.1
Solyc05g054410.2.1
Solyc06g082520.2.1
Solyc09g008440.1.1
Solyc09g091440.2.1	nucleus
Solyc11g012720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	Solyc06g082520.2.1	AT2G30470.1	19962994
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g008440.1.1	AT5G04390.1	19962994
AT3G01320.1	Solyc04g011650.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc05g054410.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc11g012720.1.1	AT5G47660.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087380.1.1	Tomato	nucleus, plastid	55.21	77.37
Solyc04g025000.1.1	Tomato	cytosol, mitochondrion, nucleus	29.69	29.53
Solyc07g041320.1.1	Tomato	cytosol	30.73	27.96
KRH18559	Soybean	nucleus	57.81	23.62
Solyc04g024990.1.1	Tomato	cytosol	30.21	21.25
Solyc10g047970.1.1	Tomato	cytosol	25.0	21.24
Solyc10g047990.1.1	Tomato	cytosol	15.62	20.13
Solyc10g048000.1.1	Tomato	endoplasmic reticulum	30.73	19.93
Solyc10g047980.1.1	Tomato	nucleus	21.35	18.72
Solyc11g045320.1.1	Tomato	cytosol	14.06	18.62
Solyc02g087390.1.1	Tomato	cytosol	44.79	16.9
PGSC0003DMT400003538	Potato	nucleus	81.25	11.5
Solyc02g087360.2.1	Tomato	nucleus	74.48	10.65
Solyc02g067570.2.1	Tomato	nucleus	65.1	9.27
VIT_14s0066g02330.t01	Wine grape	nucleus	62.5	8.66
KRG93437	Soybean	nucleus	63.02	8.63
CDX85568	Canola	nucleus	56.77	8.16
Bra023501.1-P	Field mustard	nucleus	56.77	8.16
CDX91007	Canola	nucleus	55.21	8.01
Bra040510.1-P	Field mustard	mitochondrion, nucleus	55.73	7.96
Bra006276.1-P	Field mustard	nucleus	55.73	7.95
CDX78604	Canola	nucleus	55.73	7.93
CDX70587	Canola	nucleus	55.73	7.9
CDY28683	Canola	mitochondrion, nucleus	55.21	7.88
AT3G01320.1	Thale cress	mitochondrion, nucleus	54.17	7.58
AT5G15020.1	Thale cress	nucleus	53.12	7.46
Solyc05g006540.2.1	Tomato	nucleus	51.56	7.28
KRH18561	Soybean	nucleus	4.17	0.89

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:IPR003822	UniProt:K4BBP4	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	EnsemblPlantsGene:Solyc02g087370.1	EnsemblPlants:Solyc02g087370.1.1
UniParc:UPI0002767F39	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:49819425..49821112

Molecular Weight (calculated)

21801.8 Da

IEP (calculated)

7.074

GRAVY (calculated)

-0.535

Length

192 amino acids

Sequence
(BLAST)

001: MKRLRDDVYD SPSFKRPFES NKGETYSPSQ VPGSGKSGVG GGSSAGGASD SNSNLTTGDA LSYLKEVKDM FRCQRDNFSL RKIDIVGVIA RVKDLFKGHP
101: MLILGFNTFL PRGYETTLND EDETPPKKVE FEEAISFVNK IKTHFQNDDH VYKSFLDILN MYRKEHKGLR YELHYFDFLI IIGEKVISDI VQ

Best Arabidopsis Sequence Match ( AT3G01320.1 )
(BLAST)

0001: MKRIRDDVYA SGSQFRRPLG SSRGQLCGQS PVHGSGDTEE EEEGGSRRVS QKLTTNDALS YLREVKEMFQ DQREKYDRFL EVMKDFKAQR TDTGGVIARV
0101: KELFKGHNNL IYGFNTFLPK GYEITLIEED DALPKKTVEF EQAINFVNKI KMRFKHDEHV YKSFLEILNM YRKENKEIKE VYNEVSILFQ GHLDLLEQFT
0201: RFLPASLPSH SAAQHSRSQA QQYSDRGSDP PLLHQMQVEK ERRRERAVAL RGDYSVERYD LNDDKTMVKI QREQRKRLDK ENRARRGRDL DDREAGQDNL
0301: HHFPEKRKSS RRAEALEAYS GSASHSEKDN LKSMYKQAFV FCEKVKDRLC SQDDYQTFLK CLNIFSNGII QRKDLQNLVS DLLGKFPDLM DEFNQFFERC
0401: ESITDGFQRL AGVMSKKLFS SEEQLSRPMK VEEKESEHKP ELEAVKETEQ CKKEYMGKSI QELDLSDCEC CTPSYRLLPA DYPIPIASQR SELGAEVLND
0501: HWVSVTSGSE DYSFKHMRRN QYEESLFRCE DDRFELDMLL ESVSSAARSA ESLLNIITEK KISFSGSFRI EDHFTALNLR CIERLYGDHG LDVIDILNKN
0601: PATALPVILT RLKQKQGEWK KCRDDFDKVW ANVYAKNHYK SLDHRSFYFK QQDSKNLSAK SLLAEIKELK EKSQNDDDVL LSISAGYRQP INPNLEYEYL
0701: NRAIHEDMFK VVQFSCEELC STKEQLSKVL RLWENFLEAV LGVPPRAKGT DLVEDVVINP KTLDVNHSTS PNGEAAVSSG GDTARLASRK LKSAANGDEN
0801: SSSGTFKHGI GLLNKDSTGK ENLEDVEIAN RDGVACSAVK PQKEQETGNE AEKRFGKPIP MDISERAAIS SISIPSGAEN NHCVVGKEVL PGAHEIQAKP
0901: SDTLTDIHHD VDSIETVHST QGGDVGNSIV LANGLRSDSS KGTRNSDDPE GPSRNEKEEG ELSPNGDFED NFGVYKDHGV KSTSKPENSA EAEVEADAEV
1001: ENEDDADDVD SENASEASGT ESGGDVCSQD EDREEENGEH DEIDGKAESE GEAEGMDPHL LEGESELLPQ SERVLLSVRP LSKHVAAVLC DERTKDLQVF
1101: YGNDDFYVLF RLHQILYERI LYAKRNCSGG ELKSKNLKDT NAGDPYARFM RVLYGLLDGS AENTKFEDEC RAIIGNQSYV LFTLDKLIYR LVKQLQAIVA
1201: DEMDNKLLQL YEYEKSRKPG RVIDSVYYEN VRVLVHEENI YRLECSSLPS RLSIQLMDNI IEKPEAYAVS MDPTFASYMQ TELLSVSSGK KEEGHDIVLQ
1301: RNLTGLYDLC KAMEGVEVVN GLECKMSCSS YKIAYVLDTE DYFHRKKKKK KTEQLWQRNK VRVERFHRFL SA

Arabidopsis Description

SNL1Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.