Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047980.1.1 | Tomato | nucleus | 77.85 | 52.97 |
| Solyc10g047970.1.1 | Tomato | cytosol | 77.85 | 51.33 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 69.13 | 34.8 |
| PGSC0003DMT400097436 | Potato | cytosol | 71.81 | 21.57 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 38.93 | 21.01 |
| Solyc07g041320.1.1 | Tomato | cytosol | 24.16 | 17.06 |
| Solyc04g025000.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.48 | 16.58 |
| Solyc02g087370.1.1 | Tomato | cytosol | 20.13 | 15.62 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 14.09 | 15.33 |
| CDY55066 | Canola | cytosol | 31.54 | 11.81 |
| Solyc11g045320.1.1 | Tomato | cytosol | 11.41 | 11.72 |
| Solyc04g024990.1.1 | Tomato | cytosol | 21.48 | 11.72 |
| Solyc02g087390.1.1 | Tomato | cytosol | 27.52 | 8.06 |
| Solyc02g067570.2.1 | Tomato | nucleus | 39.6 | 4.38 |
| Solyc02g087360.2.1 | Tomato | nucleus | 38.93 | 4.32 |
| Solyc05g006540.2.1 | Tomato | nucleus | 34.23 | 3.75 |
| CDY55065 | Canola | nucleus | 1.34 | 0.29 |
Protein Annotations
| MapMan:35.2 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR003822 | UniProt:K4D058 | InterPro:PAH | PFAM:PF02671 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 |
| EnsemblPlantsGene:Solyc10g047990.1 | EnsemblPlants:Solyc10g047990.1.1 | UniParc:UPI0002769EE7 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:+:43423139..43424993
Molecular Weight (calculated)
17349.9 Da
IEP (calculated)
5.291
GRAVY (calculated)
-0.340
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRLKSDVVD TPPFKRPICS SNEESLILGF NAYFPNGYEI MLNDEEKISL KNATNYEEER NFLENIKVAV LFKDHHDLLD EFSKFLKDSV SPNPLSSLLL
101: LLDPLLPCGY DIILNDEVKP LKKSIHYEQV FNFSKKIKVT FRLPYDFTN
101: LLDPLLPCGY DIILNDEVKP LKKSIHYEQV FNFSKKIKVT FRLPYDFTN
001: MKHLPVVSFK TMVANKKLTT TDALDFLHLV KTKYQDNREI YDSFLTIMKD FRGQRAKTCD VISKVKELFK GQPELLLGFN TFLPTGFEIT LSDDELTSNS
101: KFAHFDEAYE FVNKVKVAIL FQGHRDLLEE FHLFLPHYG
101: KFAHFDEAYE FVNKVKVAIL FQGHRDLLEE FHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol,mitochondrion]
SUBAcon: [cytosol,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.