Factsheet for Solyc02g087380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g011650.2.1
Solyc05g054410.2.1
Solyc06g082520.2.1
Solyc09g008440.1.1
Solyc09g091440.2.1	nucleus
Solyc11g012720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01320.1	Solyc06g082520.2.1	AT2G30470.1	19962994
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g091440.2.1	AT4G38130.1	23371947
AT3G01320.1	Solyc09g008440.1.1	AT5G04390.1	19962994
AT3G01320.1	Solyc04g011650.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc05g054410.2.1	AT5G13820.1	19962994
AT3G01320.1	Solyc11g012720.1.1	AT5G47660.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087370.1.1	Tomato	cytosol	77.37	55.21
Solyc04g025000.1.1	Tomato	cytosol, mitochondrion, nucleus	37.96	26.94
Solyc07g041320.1.1	Tomato	cytosol	34.31	22.27
Solyc10g047970.1.1	Tomato	cytosol	35.04	21.24
Solyc04g024990.1.1	Tomato	cytosol	37.96	19.05
Solyc10g047980.1.1	Tomato	nucleus	29.93	18.72
KRH18559	Soybean	nucleus	59.85	17.45
Solyc10g048000.1.1	Tomato	endoplasmic reticulum	32.12	14.86
Solyc10g047990.1.1	Tomato	cytosol	15.33	14.09
Solyc02g087390.1.1	Tomato	cytosol	49.63	13.36
PGSC0003DMT400003538	Potato	nucleus	80.29	8.11
Solyc02g087360.2.1	Tomato	nucleus	71.53	7.3
KRG93437	Soybean	nucleus	61.31	5.99
Bra023501.1-P	Field mustard	nucleus	58.39	5.99
CDX85568	Canola	nucleus	58.39	5.99
Solyc02g067570.2.1	Tomato	nucleus	57.66	5.86
VIT_14s0066g02330.t01	Wine grape	nucleus	59.12	5.85
CDX91007	Canola	nucleus	56.2	5.82
CDX78604	Canola	nucleus	56.93	5.78
Bra006276.1-P	Field mustard	nucleus	56.2	5.72
CDX70587	Canola	nucleus	56.2	5.68
Bra040510.1-P	Field mustard	mitochondrion, nucleus	52.55	5.35
AT5G15020.1	Thale cress	nucleus	53.28	5.34
AT3G01320.1	Thale cress	mitochondrion, nucleus	53.28	5.32
CDY28683	Canola	mitochondrion, nucleus	51.82	5.27
Solyc05g006540.2.1	Tomato	nucleus	48.91	4.93
Solyc11g045320.1.1	Tomato	cytosol	2.19	2.07
KRH18561	Soybean	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	InterPro:IPR003822	UniProt:K4BBP5	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762
EnsemblPlantsGene:Solyc02g087380.1	EnsemblPlants:Solyc02g087380.1.1	TMHMM:TMhelix	UniParc:UPI0002767F3A	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:49836543..49837905

Molecular Weight (calculated)

15232.3 Da

IEP (calculated)

9.676

GRAVY (calculated)

-0.345

Length

137 amino acids

Sequence
(BLAST)

001: MKRLRDDVYD SPSFKRPFES NKGESYSPSQ VPASGQSGVG GGSSAGGASD SNSNLRTGDA LSYLKEVKDM FRSQRDKYDM FLDVMKDFKA QRIAPLIFLV
101: IDIVGVMARV KDLFKGHPML ILGFNTFLPR GYEITLH

Best Arabidopsis Sequence Match ( AT5G15020.1 )
(BLAST)

0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR

Arabidopsis Description

SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.