Factsheet for Solyc05g054410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067570.2.1
Solyc02g087360.2.1
Solyc02g087370.1.1
Solyc02g087380.1.1
Solyc02g087390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	Solyc02g067570.2.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087360.2.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087370.1.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087380.1.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087390.1.1	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060234	Potato	nucleus	89.99	89.99
Solyc04g011650.2.1	Tomato	nucleus	55.3	57.12
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	50.07	49.01
CDX91094	Canola	nucleus	37.3	46.14
CDX85624	Canola	mitochondrion	36.43	46.05
KRH30983	Soybean	nucleus	45.14	45.8
KRG97906	Soybean	nucleus	44.7	45.7
AT5G13820.1	Thale cress	nucleus	41.94	45.16
AT3G12560.2	Thale cress	nucleus	39.91	44.43
Bra023437.1-P	Field mustard	nucleus	36.72	44.23
CDY08423	Canola	nucleus	39.48	43.94
CDX78540	Canola	nucleus	38.9	43.86
Bra006218.1-P	Field mustard	mitochondrion	38.9	43.79
CDX70522	Canola	nucleus	36.43	43.43
CDY42156	Canola	nucleus	38.32	43.07
Bra034751.1-P	Field mustard	nucleus	37.88	43.0
CDY50353	Canola	nucleus	37.74	42.76
CDY50529	Canola	nucleus	37.59	42.67
Bra038729.1-P	Field mustard	nucleus	37.45	42.3
GSMUA_Achr8P20810_001	Banana	nucleus	39.62	41.94
Solyc06g005590.2.1	Tomato	nucleus	41.22	41.22
CDX69626	Canola	nucleus	35.27	40.98
Bra008800.1-P	Field mustard	nucleus	35.12	40.81
CDY68172	Canola	nucleus	33.24	40.6
Solyc06g076270.2.1	Tomato	nucleus	40.35	39.71
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	36.87	39.38
GSMUA_Achr7P15090_001	Banana	nucleus	39.48	39.25
KXG39691	Sorghum	nucleus, plastid	39.19	38.24
Os03t0274300-01	Rice	nucleus	38.17	38.01
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.9	37.64
HORVU4Hr1G059800.2	Barley	nucleus	36.57	36.47
TraesCS4B01G207700.1	Wheat	nucleus	36.57	36.42
TraesCS4D01G208600.1	Wheat	nucleus	36.43	36.32
TraesCS4A01G096700.1	Wheat	nucleus	36.43	36.32
GSMUA_Achr10P...	Banana	cytosol, plastid	4.79	35.87
TraesCS3A01G528500.1	Wheat	nucleus, plastid	33.67	35.64
TraesCS3D01G533700.1	Wheat	nucleus, plastid	33.24	35.23
TraesCS3B01G597500.1	Wheat	nucleus, plastid	33.24	35.18
HORVU3Hr1G115540.2	Barley	nucleus, plastid	32.95	34.5
Zm00001d028608_P006	Maize	nucleus	34.54	34.2
Zm00001d047808_P001	Maize	nucleus, plastid	36.43	33.6
Solyc12g027690.1.1	Tomato	extracellular	7.55	33.55
EES10985	Sorghum	mitochondrion	30.62	32.46
TraesCS6A01G392300.1	Wheat	nucleus	26.85	27.57
TraesCS6D01G378100.1	Wheat	nucleus	26.85	27.57
TraesCS6B01G432500.1	Wheat	nucleus	26.71	27.42
Solyc12g027710.1.1	Tomato	cytosol	8.42	23.97
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	24.38	21.62
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.42	20.07
Os02t0817800-03	Rice	nucleus	11.76	12.8

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	UniProt:K4C2B9	InterPro:Myb_dom
PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc05g054410.2	EnsemblPlants:Solyc05g054410.2.1	UniParc:UPI0002766ADF	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64337636..64342877

Molecular Weight (calculated)

76989.6 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.711

Length

689 amino acids

Sequence
(BLAST)

001: MVYKKKLDFG FNGFQVPVIP KAPRSVRRRR SCKKLDDDQI CAFELLAAVA GKLLLESESS TSSNAAEGKN EIADGRDGIK SEQVEEGKAV KSECLDQGSC
101: VESDYLPDTA VQDQNLKHGF DKPHHAENNY FLEHTSTVIG SDADLKLENC KEVNITDGKF HHKIEGGSSS LEDPCDSKIR TGTQKHLDDD SKQIEDVTVT
201: NTCSVKNPIK ECVNNSGLFN SDGSVQLPLY RDSVPSASFV KQRNSVKLGV RDDDENSFDC YRYSTKLRAF RTTSRLGYRR IRKMLKSRHW KVAPKLKEYE
301: RSYTNGGMES FYLSRKSVRA RKRCQLEVPS KRRKLSNHGF AVAYYQEASS ESVTNSPDKE IKRDISTSHA IPPRGTADPA SVNNHHKKDP NVKFSIKSFK
401: VPELYIEVPE TATVGSLKRT VMEAVTAILE SGLRVGVVLQ GKKVRDDNRT LEQAGISQNG NLDNLGFTLE PRFTQVSPSS SPNKLPASST YVADQELTRR
501: RPSPIMEFGI HNASADPLET DMCKYSENNH PSELSPTNPI DSSTDVSIPD SRALVIVPSV NAEALAMVPL NHKSKRSELS QRRIRRPFSV AEVEALVEAV
601: EHLGTGRWRD VKMRAFDNAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQELLDRVLA AHAYWSQQQG KHHAELLKTP DAKAQKVSA

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.