CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G597500.1	Wheat	nucleus, plastid	58.77	58.68
TraesCS3D01G533700.1	Wheat	nucleus, plastid	58.15	58.15
TraesCS3A01G528500.1	Wheat	nucleus, plastid	58.0	57.91
HORVU3Hr1G115540.2	Barley	nucleus, plastid	58.46	57.75
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	74.15	53.14
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.46	38.76
GSMUA_Achr8P20810_001	Banana	nucleus	37.85	37.79
KXG39691	Sorghum	nucleus, plastid	38.77	35.69
VIT_06s0004g04940.t01	Wine grape	nucleus	38.15	35.63
GSMUA_Achr7P15090_001	Banana	nucleus	37.85	35.5
AT3G46590.2	Thale cress	nucleus	29.23	34.36
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	37.38	34.13
PGSC0003DMT400005476	Potato	nucleus	34.92	32.8
AT5G59430.2	Thale cress	nucleus	28.77	32.35
CDY10282	Canola	nucleus	29.85	32.33
AT1G07540.1	Thale cress	nucleus	31.23	32.22
Solyc06g005590.2.1	Tomato	nucleus	34.15	32.22
CDY06712	Canola	nucleus	29.54	32.21
Bra002566.1-P	Field mustard	nucleus	28.15	32.16
Bra015585.1-P	Field mustard	nucleus	29.38	31.94
KRH24782	Soybean	nucleus	30.77	31.85
KRH29783	Soybean	nucleus	33.69	31.74
Solyc06g076270.2.1	Tomato	nucleus	34.15	31.71
CDY15617	Canola	nucleus	28.77	31.69
Bra030689.1-P	Field mustard	nucleus	29.38	31.47
PGSC0003DMT400077969	Potato	nucleus	33.54	31.37
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	33.54	30.97
KRH23087	Soybean	nucleus	34.15	30.92
PGSC0003DMT400060234	Potato	nucleus	32.77	30.91
Solyc05g054410.2.1	Tomato	nucleus	32.46	30.62
GSMUA_Achr10P...	Banana	cytosol, plastid	4.31	30.43
KRH10245	Soybean	nucleus	33.69	30.42
KRH49110	Soybean	nucleus	28.15	30.2
KRG99966	Soybean	nucleus	28.0	30.18
KRG97906	Soybean	nucleus	30.92	29.82
VIT_08s0007g00500.t01	Wine grape	nucleus	31.38	29.69
KRH30983	Soybean	nucleus	30.31	29.01
PGSC0003DMT400016260	Potato	nucleus	29.54	28.66
Solyc04g011650.2.1	Tomato	nucleus	29.38	28.64
CDX86474	Canola	nucleus	24.31	28.37
Solyc12g027690.1.1	Tomato	extracellular	6.15	25.81
CDY33039	Canola	nucleus	28.15	22.13
Solyc12g027710.1.1	Tomato	cytosol	8.15	21.9
CDX80268	Canola	nucleus	27.85	21.86

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:8073576	UniProt:C5YAF0	EnsemblPlants:EES10985	ProteinID:EES10985
ProteinID:EES10985.1	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	InterPro:Myb_dom	PFscan:PS50053
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb	SMART:SM00717	EnsemblPlantsGene:SORBI_3006G118700
SUPFAM:SSF46689	SUPFAM:SSF54236	unigene:Sbi.14896	UniParc:UPI0001A86F20	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
RefSeq:XP_002446657.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:48591356..48597638

Molecular Weight (calculated)

72018.9 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.622

Length

650 amino acids

Sequence
(BLAST)

001: MMVRKRLVYR SRGRRIPTMP RVPNSARGKR STRRNKDEND MCAFDLLATV AGNLLADQDN SSNVPNTNAA KAKKRKSFKE EHFDEILPLK DVAMEKDVGS
101: GSVSAFPRQA NNCLAENSST RNEAESILES LTMKSDMLAK IPECGSHGIH HPGPSSSVEP EQVQKAEPKV IRRQADGHAV AYDIFDSVDV NGKPPALVSS
201: DSSSCVPLSS HDKEHQTSSL YQGEVQYAAD RDDDENSSGC THPSTIENKG CKPQYLGNHR IRKLLASKVR KAARNKICGG IPSKKIYGGL SNKGSKLNLC
301: GKKISTTRQK VQRTIFKKKK LAHHTTSFAK EMLTEASRTS FATGGQNKSC ESENYHVKLR IKSFNIPELF IKVPENATIG SLKRTVMDVV NSIMEGGLRV
401: GVLLQGKDIQ DDNKTLRQAG ICHDKKLNNI DFTLQCERER ESPSGVIIPE QMDFLTADMV EPLARMKCEE PFPEADVGDD NQHSKAPYRS RSLSDLYSVQ
501: CPVEMASQDT SASSQAIIPV SPAPSDIGAL AIVPLCKSKR SEIGQRRIRR PFTVGEVEAL VGAVEQLGTG RWRAVKTLAF DNIEHRTYVD LKDKWKTLVH
601: TASISPQQRR GQPVPQELLD RVLAAQAYWS QHLQDKPRGK ARLLPEICFP

Best Arabidopsis Sequence Match ( AT3G12560.2 )
(BLAST)

001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV

Arabidopsis Description

TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.