Factsheet for Bra002566.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G59430.2	Thale cress	nucleus	71.88	70.76
CDY33039	Canola	nucleus	96.49	66.38
Bra015585.1-P	Field mustard	nucleus	38.66	36.79
GSMUA_Achr8P20810_001	Banana	nucleus	40.07	35.02
Bra038729.1-P	Field mustard	nucleus	37.43	34.92
Bra030689.1-P	Field mustard	nucleus	36.56	34.27
Bra006218.1-P	Field mustard	mitochondrion	36.2	33.66
Bra034751.1-P	Field mustard	nucleus	35.85	33.61
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.79	33.33
Bra008800.1-P	Field mustard	nucleus	34.45	33.05
Bra023437.1-P	Field mustard	nucleus	33.04	32.87
GSMUA_Achr10P...	Banana	cytosol, plastid	5.27	32.61
GSMUA_Achr7P15090_001	Banana	nucleus	39.54	32.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	40.42	32.3
Os03t0274300-01	Rice	nucleus	36.73	30.2
KXG39691	Sorghum	nucleus, plastid	37.43	30.17
TraesCS4D01G208600.1	Wheat	nucleus	35.68	29.38
TraesCS4A01G096700.1	Wheat	nucleus	35.68	29.38
TraesCS4B01G207700.1	Wheat	nucleus	35.5	29.19
HORVU4Hr1G059800.2	Barley	nucleus	35.15	28.94
TraesCS3D01G533700.1	Wheat	nucleus, plastid	32.86	28.77
HORVU3Hr1G115540.2	Barley	nucleus, plastid	33.04	28.57
TraesCS3A01G528500.1	Wheat	nucleus, plastid	32.51	28.42
TraesCS3B01G597500.1	Wheat	nucleus, plastid	32.51	28.42
EES10985	Sorghum	mitochondrion	32.16	28.15
Zm00001d047808_P001	Maize	nucleus, plastid	35.85	27.31
Zm00001d028608_P006	Maize	nucleus	31.63	25.86
TraesCS6A01G392300.1	Wheat	nucleus	29.0	24.59
TraesCS6B01G432500.1	Wheat	nucleus	29.0	24.59
TraesCS6D01G378100.1	Wheat	nucleus	29.0	24.59
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	25.13	18.4
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	28.65	17.97
Os02t0817800-03	Rice	nucleus	13.01	11.69

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	EnsemblPlantsGene:Bra002566	EnsemblPlants:Bra002566.1	EnsemblPlants:Bra002566.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737
GO:GO:0005886	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	GO:GO:0009873	GO:GO:0009987	GO:GO:0016020	GO:GO:0031965	GO:GO:0046686
InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	UniProt:M4CED5	InterPro:Myb_dom	PFscan:PS50053
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	UniParc:UPI0002543B1E	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:

Description

AT5G59430 (E=2e-215) ATTRP1 | TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding

Coordinates

chrA10:+:8846363..8848760

Molecular Weight (calculated)

63301.9 Da

IEP (calculated)

8.850

GRAVY (calculated)

-0.643

Length

569 amino acids

Sequence
(BLAST)

001: MVSHKCVEEF SLQFPANARA PRSARKKRSF KKEEITENDK TCAIDLLATV AENLLSETGS SHMSIDKPVE DHCLVKEEFP VEDKPLKPAT LPEFNPYQGS
101: SMSPCGFSSV ISGKVEIEAE GFSHSGGIDS CQAGQDLKPS VDGGAVVLDA RPNGVGSLGG SSSRTKVPSM GAGVSLGALD DVHMFSRDDD ENFSGYICPR
201: VTKKSPRSVP RVGDRRIRKI LASRHWKGGS RHSEAKSWRN YYLHHQRSYP IKKRKYFDHI SDSVSDDYRL RSKMQRGSRA VSTMKGPGAS FVSSDSHVRL
301: RIKSFRVPEL FVEIPETATV GSLKRMVMEA VSTLLSDGHR VGLMVQGKKV RDDNKTLHQT GISQDNTHLD SLDFSLEPSS EAPHLLSSNP SGHVCEELSM
401: CRTSDMDTLF KTEPDLALFP SGSFDKETAA DDSKALVHAA LTELSPPQPP RHKSNKQQQQ QQQTAQRRMR RPFSVTEVEA LVQAVEKLGT GRWRDVKHSA
501: FEDADHRTYV DLKDKWKTLV HTAKISPQQR RGEPVPQELL NRVLNAHGYW SQQHMETLAL PKPESVLLL

Best Arabidopsis Sequence Match ( AT5G59430.3 )
(BLAST)

001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQHLGGRL SFVYYYYY

Arabidopsis Description

TRP1Telomere repeat-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.