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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • nucleus 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06712 Canola nucleus 95.82 96.14
Bra030689.1-P Field mustard nucleus 75.25 74.14
AT1G07540.1 Thale cress nucleus 72.58 68.89
Bra002566.1-P Field mustard nucleus 36.79 38.66
GSMUA_Achr8P20810_001 Banana nucleus 41.81 38.4
GSMUA_Achr10P... Banana cytosol, plastid 5.69 36.96
Bra006218.1-P Field mustard mitochondrion 37.79 36.93
Bra038729.1-P Field mustard nucleus 37.63 36.89
Bra034751.1-P Field mustard nucleus 36.62 36.08
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 42.47 35.67
Bra023437.1-P Field mustard nucleus 33.95 35.49
GSMUA_Achr7P15090_001 Banana nucleus 40.64 35.06
GSMUA_Achr9P03910_001 Banana mitochondrion, nucleus 37.79 35.04
KXG39691 Sorghum nucleus, plastid 41.3 34.99
TraesCS4D01G208600.1 Wheat nucleus 40.13 34.73
TraesCS4A01G096700.1 Wheat nucleus 40.13 34.73
HORVU4Hr1G059800.2 Barley nucleus 40.13 34.73
Os03t0274300-01 Rice nucleus 40.13 34.68
TraesCS4B01G207700.1 Wheat nucleus 40.13 34.68
Bra008800.1-P Field mustard nucleus 33.61 33.9
TraesCS3D01G533700.1 Wheat nucleus, plastid 34.45 31.69
TraesCS3A01G528500.1 Wheat nucleus, plastid 34.45 31.64
HORVU3Hr1G115540.2 Barley nucleus, plastid 34.62 31.46
Zm00001d047808_P001 Maize nucleus, plastid 38.96 31.19
TraesCS3B01G597500.1 Wheat nucleus, plastid 33.95 31.18
Zm00001d028608_P006 Maize nucleus 35.62 30.6
EES10985 Sorghum mitochondrion 31.94 29.38
TraesCS6D01G378100.1 Wheat nucleus 26.92 23.99
TraesCS6A01G392300.1 Wheat nucleus 26.76 23.84
TraesCS6B01G432500.1 Wheat nucleus 26.76 23.84
HORVU6Hr1G091110.8 Barley cytosol, nucleus, plastid 23.58 18.15
Zm00001d025679_P001 Maize cytosol, nucleus, plastid 26.76 17.64
Os02t0817800-03 Rice nucleus 12.21 11.53
Protein Annotations
EnsemblPlants:Bra015585.1EnsemblPlants:Bra015585.1-PEnsemblPlantsGene:Bra015585Gene3D:1.10.246.220GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/Myb
PANTHER:PTHR21717PANTHER:PTHR21717:SF38PFscan:PS51294SEG:segSMART:SM00717SUPFAM:SSF46689
UniParc:UPI0002544BCDUniProt:M4DGG1MapMan:15.5.2.2:::
Description
AT1G07540 (E=2e-233) TRFL2 | TRFL2 (TRF-LIKE 2); DNA binding
Coordinates
chrA10:+:859437..861942
Molecular Weight (calculated)
66928.7 Da
IEP (calculated)
9.990
GRAVY (calculated)
-0.673
Length
598 amino acids
Sequence
(BLAST)
001: MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNDAER
101: RFFVSEILPK THRSPSPPKD FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH HIGSGFKKPV PPPVCSDDID
201: LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL SSKQKETTVT NSDMDLKPSY YNKKHCLKSF RSERRYPIKK RRYFDGYTAS QSEETPKRGS
301: AFMSTIACQK QPALQSRDSH VKLGIKSFKV PELFIEIPET ATVGSLKRTV LEAVTTILEG GLRIGVLVHG KKVRDDSKML LQNGISLDTL SDTLGFCLEP
401: NPPHSTKPLA PEDSDCLRPF NVPHTLTRCL ASQGKHAKPS NSVESDLDSK PSAHNRAKPV YSRALIPVAP PLHAQALNVV PPRKPKRSEV AQRRIRRPFS
501: VAEVEVLVQA VERLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL MAHAYWSQQQ GKQQLLEGHQ KLETSLGL
Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Arabidopsis Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.