Factsheet for HORVU6Hr1G091110.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G378100.1	Wheat	nucleus	74.0	85.69
TraesCS6B01G432500.1	Wheat	nucleus	74.0	85.69
TraesCS6A01G392300.1	Wheat	nucleus	74.0	85.69
HORVU3Hr1G115540.2	Barley	nucleus, plastid	35.14	41.49
Os02t0817800-03	Rice	nucleus	23.29	28.59
GSMUA_Achr8P20810_001	Banana	nucleus	23.04	27.5
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	22.78	27.44
AT3G46590.2	Thale cress	nucleus	19.3	27.12
HORVU4Hr1G059800.2	Barley	nucleus	23.42	26.34
VIT_06s0004g04940.t01	Wine grape	nucleus	23.17	25.86
AT5G59430.2	Thale cress	nucleus	19.05	25.61
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	23.04	25.43
Bra002566.1-P	Field mustard	nucleus	18.4	25.13
GSMUA_Achr7P15090_001	Banana	nucleus	22.39	25.11
PGSC0003DMT400060234	Potato	nucleus	22.01	24.82
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	22.52	24.58
Solyc05g054410.2.1	Tomato	nucleus	21.62	24.38
Solyc06g005590.2.1	Tomato	nucleus	21.36	24.09
KRG99966	Soybean	nucleus	18.66	24.05
GSMUA_Achr10P...	Banana	cytosol, plastid	2.83	23.91
CDY06712	Canola	nucleus	18.28	23.83
KRH49110	Soybean	nucleus	18.53	23.76
PGSC0003DMT400005476	Potato	nucleus	21.11	23.7
Bra015585.1-P	Field mustard	nucleus	18.15	23.58
KRH24782	Soybean	nucleus	19.05	23.57
Solyc04g011650.2.1	Tomato	nucleus	20.08	23.39
PGSC0003DMT400077969	Potato	nucleus	20.85	23.31
Bra030689.1-P	Field mustard	nucleus	18.15	23.23
CDY10282	Canola	nucleus	17.89	23.17
PGSC0003DMT400016260	Potato	nucleus	19.95	23.13
AT1G07540.1	Thale cress	nucleus	18.66	23.02
VIT_08s0007g00500.t01	Wine grape	nucleus	20.33	23.0
CDY15617	Canola	nucleus	17.37	22.88
KRG97906	Soybean	nucleus	19.82	22.85
Solyc06g076270.2.1	Tomato	nucleus	20.46	22.71
Solyc12g027690.1.1	Tomato	extracellular	4.5	22.58
KRH23087	Soybean	nucleus	20.72	22.42
KRH30983	Soybean	nucleus	19.56	22.39
KRH29783	Soybean	nucleus	19.69	22.17
KRH10245	Soybean	nucleus	19.82	21.39
Solyc12g027710.1.1	Tomato	cytosol	6.56	21.07
CDX86474	Canola	nucleus	14.67	20.47
CDY33039	Canola	nucleus	19.56	18.38
CDX80268	Canola	nucleus	19.43	18.24

Protein Annotations

EnsemblPlants:HORVU6Hr1G091110.8	EnsemblPlantsGene:HORVU6Hr1G091110	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	PFscan:PS50053	SEG:seg	SUPFAM:SSF46689	SUPFAM:SSF54236
UniParc:UPI000B47BB47	UniProt:A0A287V5X2	MapMan:15.5.2.2	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:574781501..574785541

Molecular Weight (calculated)

84064.5 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.398

Length

777 amino acids

Sequence
(BLAST)

001: LRPACSLCPL GSKGQEMVFR KKSEGGSVVR RPRKPRDTTL APVKRSARLK KKQMYALDLL ATVAESLSSD EDDYSTESDQ DRAAASHNSD RATAKSEQVD
101: EAPQLNSTAL KNGCCGGYPV GCDGICASLV ETSILKTEDL STQNVADTVE GSLIEKADAD NLLTQNVADA AAESLVEKKP DVFVEGSLVT CTKPSLLDCG
201: LGTIPEYGTI GVCHPCFPTS ADVKQVHQVT PAITRSQVDG DATALHGSAD TMDVDIKPSV LNSESSSGVH LGGHDNGHKS SPFCPGQVQH AADIDNDEKP
301: TRCVHPSTSG SKGGYLSYIG DCRTRRLFAT RMRKAARSKM CGELPKKGSK FCGKKTSATR RKAQMQRMLK TKKVAECYSA QPSDEGILTE TSGTSCSRGG
401: QDPTCAFESS QRKPCASEGC NVKFIIKSFN IPELSIEVPE NATVGSLKRI VMDAVTSKIE GSLSVSVLLQ GKIIQDDNKT LHQAGICHGV KPDSIGFTLE
501: CEAKQDSHPS GIAPEEMDSA GPSVVNPLTK IKFEQPFISC TLGDYPYEGA TQVRPEICQA IVPYGASNPD ALAIVPVVPR SRQRDFGQRR KRRPFSVAEV
601: ELLVEAVELL GFGRWKNVKN HAFSDNEERT YVDLKVMISG RTWCTRRASP RSSVVAGQYR RRASWTACWR RRPTGPCTTP SAMRTKAGTR PMLPSIHPCV
701: KKKKKKKRGE TKQLLLAGAG ERQMAASMAM TMTMQVWAMV SSSVYVCYSV CMVSRWSKVK TWCGSCLGLS ISAVVCS

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.