CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15617	Canola	nucleus	91.02	85.93
CDY06712	Canola	nucleus	71.63	66.95
CDY10282	Canola	nucleus	71.27	66.17
AT1G07540.1	Thale cress	nucleus	69.48	61.43
CDY30842	Canola	nucleus	18.67	36.88
GSMUA_Achr8P20810_001	Banana	nucleus	37.88	32.41
CDX70522	Canola	nucleus	33.03	31.83
CDY50353	Canola	nucleus	34.29	31.41
CDX91094	Canola	nucleus	30.88	30.88
CDY50529	Canola	nucleus	33.21	30.48
CDX85624	Canola	mitochondrion	29.8	30.46
CDX78540	Canola	nucleus	33.39	30.44
CDY42156	Canola	nucleus	32.85	29.85
CDY68172	Canola	nucleus	29.98	29.61
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	34.11	29.46
CDY08423	Canola	nucleus	32.67	29.4
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	37.52	29.35
GSMUA_Achr7P15090_001	Banana	nucleus	36.27	29.15
Os03t0274300-01	Rice	nucleus	34.83	28.03
CDX69626	Canola	nucleus	29.44	27.66
KXG39691	Sorghum	nucleus, plastid	34.83	27.48
TraesCS4B01G207700.1	Wheat	nucleus	33.75	27.17
HORVU4Hr1G059800.2	Barley	nucleus	33.57	27.06
TraesCS4D01G208600.1	Wheat	nucleus	33.39	26.92
TraesCS4A01G096700.1	Wheat	nucleus	33.39	26.92
TraesCS3D01G533700.1	Wheat	nucleus, plastid	29.98	25.69
TraesCS3B01G597500.1	Wheat	nucleus, plastid	29.98	25.65
TraesCS3A01G528500.1	Wheat	nucleus, plastid	29.98	25.65
HORVU3Hr1G115540.2	Barley	nucleus, plastid	30.16	25.53
EES10985	Sorghum	mitochondrion	28.37	24.31
Zm00001d047808_P001	Maize	nucleus, plastid	32.5	24.23
Zm00001d028608_P006	Maize	nucleus	29.08	23.28
GSMUA_Achr10P...	Banana	cytosol, plastid	3.41	20.65
TraesCS6D01G378100.1	Wheat	nucleus	24.42	20.27
CDX80268	Canola	nucleus	29.98	20.17
TraesCS6A01G392300.1	Wheat	nucleus	24.24	20.12
TraesCS6B01G432500.1	Wheat	nucleus	24.24	20.12
CDY33039	Canola	nucleus	29.8	20.07
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	20.47	14.67
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	22.98	14.11
Os02t0817800-03	Rice	nucleus	11.31	9.95

Protein Annotations

EnsemblPlants:CDX86474	EnsemblPlantsGene:GSBRNA2T00145065001	Gene3D:1.10.246.220	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	ProteinID:CDX86474
ProteinID:CDX86474.1	SEG:seg	UniParc:UPI0004EE9355	MapMan:15.5.2.2	:	:

Description

BnaC08g02290D

Coordinates

chrLK031846:+:13133..15453

Molecular Weight (calculated)

62421.3 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.722

Length

557 amino acids

Sequence
(BLAST)

001: MVLQTRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV AGKLLLESGG VSSSSSNNAS GDNNEDRCGG KKEPDDQMVV EETHCDHHHD
101: NNAERSFFVS EILPKAREME SFNRSPNPNK DFLFGSTSGI TYEYSSEKLG TQELAYEEAK IHNGDCFRSD TNDKKPMLER LNCEPELSKN KDKHHIDLLN
201: GMENNDGRVK KVLSSKYCKV SSNQKDTMVA GSDLDLKPGY YSKKHCLKSL RSEKKYPIKK RRYFDGYTAS QSEETVRNEG LSGSPRKAFL STIACQKQPA
301: LQSRDSHVKL GIKSFRVPEL SIEVPETATI GSLKRTVLEA VTTILEGGLC IGVLVHGKKV RDDNKMLLQT GISLDTLSDT LSFCLETNPP QSTKPLSPKD
401: SDYMRPCNVP HTLTKCLPTL GKHAKPSDSV ESDLDSKPSS PFRAKPVYSR ALIPVSPPLH AQALNVVPHR KPKRSEVAQR RIRRPFSLRL YMRYVFVCDK
501: WKTLVHTARI SPQQRRGEPV PQELLDRVLM AHAYWSQQQG KQQLLEGPQK LETSLGL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.