Factsheet for GSMUA_Achr9P03910_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20810_001	Banana	nucleus	52.56	52.07
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	52.87	47.89
GSMUA_Achr7P15090_001	Banana	nucleus	49.46	46.03
VIT_06s0004g04940.t01	Wine grape	nucleus	48.53	44.97
Os03t0274300-01	Rice	nucleus	46.2	43.06
KXG39691	Sorghum	nucleus, plastid	46.67	42.63
HORVU4Hr1G059800.2	Barley	nucleus	44.03	41.1
TraesCS4B01G207700.1	Wheat	nucleus	44.03	41.04
TraesCS4D01G208600.1	Wheat	nucleus	43.88	40.96
AT3G46590.2	Thale cress	nucleus	35.04	40.87
TraesCS4A01G096700.1	Wheat	nucleus	43.72	40.81
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	44.03	40.34
TraesCS3A01G528500.1	Wheat	nucleus, plastid	40.31	39.94
TraesCS3B01G597500.1	Wheat	nucleus, plastid	40.16	39.78
KRG99966	Soybean	nucleus	37.05	39.64
Solyc06g005590.2.1	Tomato	nucleus	42.17	39.48
TraesCS3D01G533700.1	Wheat	nucleus, plastid	39.69	39.38
KRH29783	Soybean	nucleus	41.71	38.99
Zm00001d047808_P001	Maize	nucleus, plastid	44.96	38.82
AT5G59430.2	Thale cress	nucleus	34.73	38.75
HORVU3Hr1G115540.2	Barley	nucleus, plastid	39.38	38.6
VIT_08s0007g00500.t01	Wine grape	nucleus	41.09	38.57
PGSC0003DMT400077969	Potato	nucleus	41.55	38.56
EES10985	Sorghum	mitochondrion	38.76	38.46
Zm00001d028608_P006	Maize	nucleus	41.4	38.36
PGSC0003DMT400005476	Potato	nucleus	41.09	38.29
Solyc06g076270.2.1	Tomato	nucleus	41.24	38.0
KRG97906	Soybean	nucleus	39.69	37.98
KRH23087	Soybean	nucleus	42.17	37.88
KRH30983	Soybean	nucleus	39.84	37.85
Bra015585.1-P	Field mustard	nucleus	35.04	37.79
KRH49110	Soybean	nucleus	35.5	37.79
Bra002566.1-P	Field mustard	nucleus	33.33	37.79
CDY15617	Canola	nucleus	34.42	37.63
AT1G07540.1	Thale cress	nucleus	36.74	37.62
CDY06712	Canola	nucleus	34.73	37.58
KRH10245	Soybean	nucleus	41.86	37.5
CDY10282	Canola	nucleus	34.73	37.33
Solyc04g011650.2.1	Tomato	nucleus	38.45	37.18
Bra030689.1-P	Field mustard	nucleus	34.88	37.07
KRH24782	Soybean	nucleus	35.97	36.94
Solyc05g054410.2.1	Tomato	nucleus	39.38	36.87
PGSC0003DMT400016260	Potato	nucleus	37.98	36.57
PGSC0003DMT400060234	Potato	nucleus	38.91	36.43
GSMUA_Achr10P...	Banana	cytosol, plastid	4.96	34.78
CDX86474	Canola	nucleus	29.46	34.11
Solyc12g027690.1.1	Tomato	extracellular	7.75	32.26
TraesCS6B01G432500.1	Wheat	nucleus	31.47	30.25
TraesCS6D01G378100.1	Wheat	nucleus	31.32	30.1
TraesCS6A01G392300.1	Wheat	nucleus	30.85	29.66
Solyc12g027710.1.1	Tomato	cytosol	10.08	26.86
CDY33039	Canola	nucleus	33.64	26.24
CDX80268	Canola	nucleus	33.33	25.97
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	32.87	23.37
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	27.44	22.78
Os02t0817800-03	Rice	nucleus	16.28	16.59

Protein Annotations

EnsemblPlants:GSMUA_Achr9P03910_001	EnsemblPlants:GSMUA_Achr9T03910_001	EnsemblPlantsGene:GSMUA_Achr9G03910_001	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
InterPro:Ubiquitin-like_domsf	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI000296DED7	UniProt:M0TXA0	MapMan:15.5.2.2	:

Description

Putative Telomere-binding protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03910_001]

Coordinates

chr9:+:2655963..2659776

Molecular Weight (calculated)

71278.9 Da

IEP (calculated)

8.239

GRAVY (calculated)

-0.508

Length

645 amino acids

Sequence
(BLAST)

001: MMLQKRLDYG FSGCQVPAML YFPKSAKRKR SARRKVENKQ LCAIDLLATV AGELLSEREN CAPSPQCIDG ASGTTNTSKA SVKPDHLCQK EPLKTEPFDQ
101: HSCNDTVLGP EVATKRQISY AIARESKTLN NRVDIIEGDG LTGFQESENQ MPGNGLDINA VGIYGMEDSM DLDTKPPALV SSDSSTEVPV CWNYLPSNSS
201: LPKQESGMEH VVDRDDDDNS SGCTHLSTIT NKACRPRCIG NHRVRKLSTL KYWRAAPNIL KYSHISDYDT EKKRSLHGKK IYYTRQRTQR SYCKRRKLFE
301: RCLVSASNGG MYSGDIPNLC EMGGIGTEAH DPRTAVLDTY DASPSQAEQS SSYNSVKLRI KSFMVPELFI EIPETATVGS LKQTVMEAVT AFLQGGMSIG
401: VLLQGKKVRD DNKTLRQTGI SCSDKLDNLG FTLEPSLTQT PPPLTSLRGP HFLCLDDAVE PLARIPPGAL SIDQEATDST PQAVLTSSPV SDHEPIHSPT
501: DASSLDQTPA DKLALVALPP VSIEALAVVP LRKPRHPEHV QRRIRRPFSV AEVEALVQAV EKLGTGRWRD VKLRAFDSAK HRTYVDLKDK WKTLVHTARI
601: SPQQRRGEPV PQELLDRVLS AQAFWSQQQS KLHAKPPAAE PCLLL

Best Arabidopsis Sequence Match ( AT3G12560.2 )
(BLAST)

001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV

Arabidopsis Description

TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.