Factsheet for Solyc06g005590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005476	Potato	nucleus	81.86	81.5
Solyc06g076270.2.1	Tomato	nucleus	58.35	57.43
VIT_06s0004g04940.t01	Wine grape	nucleus	53.99	53.45
Solyc12g027690.1.1	Tomato	extracellular	10.45	46.45
GSMUA_Achr8P20810_001	Banana	nucleus	43.69	46.24
KRH23087	Soybean	nucleus	45.14	43.31
GSMUA_Achr7P15090_001	Banana	nucleus	42.67	42.42
KRH29783	Soybean	nucleus	42.24	42.17
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	39.48	42.17
KRH10245	Soybean	nucleus	43.98	42.08
KRH24782	Soybean	nucleus	37.88	41.56
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.67	41.29
Solyc05g054410.2.1	Tomato	nucleus	41.22	41.22
TraesCS4D01G208600.1	Wheat	nucleus	39.33	39.22
Solyc04g011650.2.1	Tomato	nucleus	37.88	39.13
HORVU4Hr1G059800.2	Barley	nucleus	39.19	39.07
TraesCS4A01G096700.1	Wheat	nucleus	39.19	39.07
TraesCS4B01G207700.1	Wheat	nucleus	39.19	39.02
Os03t0274300-01	Rice	nucleus	39.19	39.02
KXG39691	Sorghum	nucleus, plastid	39.91	38.95
GSMUA_Achr10P...	Banana	cytosol, plastid	4.79	35.87
Zm00001d047808_P001	Maize	nucleus, plastid	38.61	35.61
TraesCS3A01G528500.1	Wheat	nucleus, plastid	33.53	35.48
HORVU3Hr1G115540.2	Barley	nucleus, plastid	33.82	35.41
TraesCS3D01G533700.1	Wheat	nucleus, plastid	33.38	35.38
TraesCS3B01G597500.1	Wheat	nucleus, plastid	33.09	35.02
Zm00001d028608_P006	Maize	nucleus	34.83	34.48
EES10985	Sorghum	mitochondrion	32.22	34.15
Solyc12g027710.1.1	Tomato	cytosol	11.18	31.82
TraesCS6A01G392300.1	Wheat	nucleus	26.42	27.12
TraesCS6B01G432500.1	Wheat	nucleus	26.42	27.12
TraesCS6D01G378100.1	Wheat	nucleus	26.42	27.12
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	24.09	21.36
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	27.58	20.95
Os02t0817800-03	Rice	nucleus	11.47	12.48

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930
UniProt:K4C341	InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc06g005590.2	EnsemblPlants:Solyc06g005590.2.1
UniParc:UPI0002765D1E	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:634483..638227

Molecular Weight (calculated)

76213.6 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.671

Length

689 amino acids

Sequence
(BLAST)

001: MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSND MCAFDLLTTV AGKLLLEGES TSNSSGKDQS AVVKDTIETV KEDEDTPLKE NPCNERCQEG
101: GFFISQIVSE APVVNHCLSK STDTLSGPAS VITSSDCSEK LGSAEQFING ERKTENRNCL EHELSGCRDF SSCTLGAESK KQVKLNLSND ATITTNKRTA
201: ICSSEFPDPW DRKHSMLVAS DNTVKLSLST DPDPFGSFPV IRDDVQLANK DDDEKSWGCT QPSTRNKAFR PAPRVGDWRM RKLQASKYWE VNPQSDDEGH
301: VNVDNKTRHV YQKRENVYMS ERSQRDFPFK KRKLYYCNSF SNSDGGSSDG ICSSPTKDLN RDASGYSLAS SGARAAAGTS IPKGASASFR SNDSHVKLKI
401: KSFRVPELFV EIPENATVGS LKRTVMEAVT AILGGGLRIG VVFQGKKVRD DSKTLSQAGI SHDDKLDGLG FTLEPSPSRA SPPLGPEGCS RVLPCETPQP
501: LTRCSPGSTI IHNGMQRGTY NAFPDHSGTT LSNFIESDHD SAPSPPDASL EKNAADSRAL VPVAAMDAEA LAVVPMRKPK RCETVQRRIR RPFSVFEVEA
601: LVQAVEKLGT GRWRDVKMRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLIAHAYW SQQQARQQMK HQSETRLLL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.