CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10245	Soybean	nucleus	90.11	89.86
KRH24782	Soybean	nucleus	52.09	59.55
KRH29783	Soybean	nucleus	56.96	59.28
VIT_06s0004g04940.t01	Wine grape	nucleus	52.92	54.6
PGSC0003DMT400077969	Potato	nucleus	44.01	45.47
Solyc06g005590.2.1	Tomato	nucleus	43.31	45.14
Solyc06g076270.2.1	Tomato	nucleus	43.59	44.71
PGSC0003DMT400005476	Potato	nucleus	43.04	44.65
GSMUA_Achr8P20810_001	Banana	nucleus	38.86	42.86
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.88	42.17
KRG99966	Soybean	nucleus	35.1	41.79
KRG97906	Soybean	nucleus	37.6	40.06
KRH49110	Soybean	nucleus	33.43	39.6
Os03t0274300-01	Rice	nucleus	38.16	39.6
GSMUA_Achr7P15090_001	Banana	nucleus	38.16	39.54
KRH30983	Soybean	nucleus	37.33	39.47
KXG39691	Sorghum	nucleus, plastid	38.02	38.67
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.02	38.34
TraesCS4A01G096700.1	Wheat	nucleus	36.77	38.21
HORVU4Hr1G059800.2	Barley	nucleus	36.77	38.21
TraesCS4D01G208600.1	Wheat	nucleus	36.77	38.21
TraesCS4B01G207700.1	Wheat	nucleus	36.49	37.86
GSMUA_Achr10P...	Banana	cytosol, plastid	4.74	36.96
Zm00001d047808_P001	Maize	nucleus, plastid	35.79	34.4
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.48	34.35
EES10985	Sorghum	mitochondrion	30.92	34.15
TraesCS3A01G528500.1	Wheat	nucleus, plastid	30.92	34.1
TraesCS3D01G533700.1	Wheat	nucleus, plastid	30.78	34.0
TraesCS3B01G597500.1	Wheat	nucleus, plastid	30.5	33.64
Zm00001d028608_P006	Maize	nucleus	32.45	33.48
TraesCS6D01G378100.1	Wheat	nucleus	24.65	26.38
TraesCS6A01G392300.1	Wheat	nucleus	24.51	26.23
TraesCS6B01G432500.1	Wheat	nucleus	24.51	26.23
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	22.42	20.72
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	25.49	20.18
Os02t0817800-03	Rice	nucleus	11.98	13.59

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100792533	MapMan:15.5.2.2	EMBL:ACUP02008457	EnsemblPlantsGene:GLYMA_13G337100	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
InterPro:IPR000626	InterPro:IPR017930	UniProt:K7M3F1	EnsemblPlants:KRH23087	ProteinID:KRH23087	ProteinID:KRH23087.1
ProteinID:KRH23088.1	InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI000294F99F	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:43015150..43024546

Molecular Weight (calculated)

79841.2 Da

IEP (calculated)

8.570

GRAVY (calculated)

-0.669

Length

718 amino acids

Sequence
(BLAST)

001: MVLQKRLDYS FYGYQVPTKR RATRLAKRRV TFQRRLEDNQ MCAFDLLATV ADNLLQEKQN PTTSSDRSSE KDGDGFPKEE RQDANKPFKT ELSDEASCDR
101: KCQLEFVKEG SSNANSFKVE LSDEGSSDRK CFSNISSQVY NQNCCSKELP EHEIDGHLCI ASIVTSSSCS EKIVAETLVD GKGHNGMEKL ASKVELGSCG
201: YLESRGCKLD GDVSKVKDDK FGKVPIDTGT GLCCFEDTLD EKPLALISSC GNAKMSGYDD SMPQSSWSKG CDNVLVDSRD DDENFSGCAH PSTKIKSFRP
301: ITCIDDRKTK KRLASKHHKV SQESKHDILS NSVLDGNLKS VYSSRKNYYK SQRSQMNIPF KKRKLFNCSS DTNSNGYIRS DDTCYSPKND TNQSVSCSSS
401: GMSQDHGTSS LGHSALRSRD SYVKLRIKSF RVPELFIEIP ETATVGSLKR TVMEAVTAVL GGGLRVGVIL HGKKVRDDSK TLLQTGISHD NHLDALGFAL
501: EPNCSRNRPS ACATTDSLHI PSADMPQPLI GYPSSPAVIH QRIQGFSNML AKHQATSSGN LVESDHDSAP SPINTSGEKY LSDSKELITV PEMGMEALAV
601: LPVHQKSKRT EIAQRRIRRP FSVTEVEALV QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISAQQRRG EPVPQELLDR VLTAHAYWSQ
701: QQTKQQLKHH STKPCLLL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.