CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29783	Soybean	nucleus	88.53	80.58
KRH23087	Soybean	nucleus	59.55	52.09
KRH10245	Soybean	nucleus	59.39	51.81
VIT_06s0004g04940.t01	Wine grape	nucleus	52.71	47.56
PGSC0003DMT400077969	Potato	nucleus	42.99	38.85
Solyc06g076270.2.1	Tomato	nucleus	42.52	38.14
GSMUA_Achr8P20810_001	Banana	nucleus	39.33	37.94
Solyc06g005590.2.1	Tomato	nucleus	41.56	37.88
PGSC0003DMT400005476	Potato	nucleus	41.56	37.72
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	36.94	35.97
GSMUA_Achr7P15090_001	Banana	nucleus	39.49	35.79
KRG99966	Soybean	nucleus	34.08	35.49
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.81	35.11
KRG97906	Soybean	nucleus	37.58	35.01
KRH30983	Soybean	nucleus	37.74	34.9
GSMUA_Achr10P...	Banana	cytosol, plastid	4.94	33.7
KRH49110	Soybean	nucleus	32.32	33.5
KXG39691	Sorghum	nucleus, plastid	36.47	32.44
Os03t0274300-01	Rice	nucleus	35.51	32.23
HORVU4Hr1G059800.2	Barley	nucleus	35.19	31.98
TraesCS4A01G096700.1	Wheat	nucleus	35.19	31.98
TraesCS4D01G208600.1	Wheat	nucleus	34.87	31.69
TraesCS4B01G207700.1	Wheat	nucleus	34.87	31.65
HORVU3Hr1G115540.2	Barley	nucleus, plastid	32.32	30.85
EES10985	Sorghum	mitochondrion	31.85	30.77
TraesCS3A01G528500.1	Wheat	nucleus, plastid	31.85	30.72
TraesCS3D01G533700.1	Wheat	nucleus, plastid	31.69	30.62
TraesCS3B01G597500.1	Wheat	nucleus, plastid	31.69	30.57
Zm00001d047808_P001	Maize	nucleus, plastid	34.55	29.05
Zm00001d028608_P006	Maize	nucleus	30.41	27.44
TraesCS6D01G378100.1	Wheat	nucleus	26.75	25.04
TraesCS6A01G392300.1	Wheat	nucleus	26.59	24.89
TraesCS6B01G432500.1	Wheat	nucleus	26.43	24.74
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.57	19.05
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	27.39	18.96
Os02t0817800-03	Rice	nucleus	10.03	9.95

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100816121	MapMan:15.5.2.2	EMBL:ACUP02007185	EnsemblPlantsGene:GLYMA_12G062300	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
UniProt:I1LQP6	InterPro:IPR000626	InterPro:IPR017930	EnsemblPlants:KRH24782	ProteinID:KRH24782	ProteinID:KRH24782.1
InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI00023D09DA	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:4548629..4553065

Molecular Weight (calculated)

69562.8 Da

IEP (calculated)

8.127

GRAVY (calculated)

-0.699

Length

628 amino acids

Sequence
(BLAST)

001: MSSDTSSEKD QSGFVKECQD ANKPSKSVIS DEGSCDKSGF SRLSSQTNNK NCGLKEFPHL AIDGDAGTAS IVTSSTCLEG FIAEKLVDGN SHFKVENVTS
101: TVNLDSSDYP KHSNFKLHGD TSKGKDELHK FEKVPIGSGI DMCSFEDPLD DNPPALISLG GNAKLSGYND RIPCSLLSKS RDNVPVVSRD DDENSYGCTH
201: PINTKTKSFR LKTGIGDNRI SKRLASNFQK VAEKTKDHTH SNNDGDWKRT YCSKRNCNKH QSSQMNIPFK KRKLFNYRSV SNSNGLIRSG GIYYSPENCM
301: NQDGCGSPPG MHKDPGMPSL EACQHQTLRS RGSHVNLRIK SFRVPELFIE VPETATIGSL KRTVMDAVTA VLGGELHIGV FLQGKKVKDD SKTLLQTGIS
401: HQNELDALGF TLEPNSSQSL PIVCAAHSPG PKADITQPVI RYPSSPAVIH QRIQGNSDML PEHQVTSLGS HFENDHDSAP SPVNASVEKG MKDSKELVTV
501: PEMDEELAMV PVHQKSKRSE IVQRRIRRPF SVDEVEALVQ AVEKLGTGRW RDVKVCAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV
601: LVAHAYWSHQ QTKPQHKHHP ETETVFSF

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.