Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G378100.1 | Wheat | nucleus | 96.57 | 96.57 |
| TraesCS6A01G392300.1 | Wheat | nucleus | 96.42 | 96.42 |
| HORVU6Hr1G091110.8 | Barley | cytosol, nucleus, plastid | 85.69 | 74.0 |
| TraesCS3B01G597500.1 | Wheat | nucleus, plastid | 42.92 | 44.24 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 30.25 | 31.47 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 30.25 | 31.18 |
| AT3G46590.2 | Thale cress | nucleus | 24.59 | 29.84 |
| TraesCS4B01G207700.1 | Wheat | nucleus | 30.55 | 29.62 |
| Os02t0817800-03 | Rice | nucleus | 27.72 | 29.38 |
| AT5G59430.2 | Thale cress | nucleus | 25.19 | 29.24 |
| Bra002566.1-P | Field mustard | nucleus | 24.59 | 29.0 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 29.51 | 28.57 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 29.96 | 28.23 |
| VIT_06s0004g04940.t01 | Wine grape | nucleus | 29.21 | 28.16 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 29.51 | 28.12 |
| PGSC0003DMT400060234 | Potato | nucleus | 28.02 | 27.29 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 3.73 | 27.17 |
| CDY06712 | Canola | nucleus | 23.84 | 26.85 |
| Bra015585.1-P | Field mustard | nucleus | 23.84 | 26.76 |
| Solyc05g054410.2.1 | Tomato | nucleus | 27.42 | 26.71 |
| PGSC0003DMT400005476 | Potato | nucleus | 27.27 | 26.45 |
| KRH24782 | Soybean | nucleus | 24.74 | 26.43 |
| Solyc06g005590.2.1 | Tomato | nucleus | 27.12 | 26.42 |
| Solyc04g011650.2.1 | Tomato | nucleus | 26.23 | 26.39 |
| KRG99966 | Soybean | nucleus | 23.7 | 26.37 |
| Bra030689.1-P | Field mustard | nucleus | 23.84 | 26.36 |
| CDY10282 | Canola | nucleus | 23.55 | 26.33 |
| PGSC0003DMT400077969 | Potato | nucleus | 27.27 | 26.33 |
| KRH49110 | Soybean | nucleus | 23.7 | 26.24 |
| AT1G07540.1 | Thale cress | nucleus | 24.59 | 26.19 |
| CDY15617 | Canola | nucleus | 22.95 | 26.1 |
| PGSC0003DMT400016260 | Potato | nucleus | 25.93 | 25.97 |
| KRG97906 | Soybean | nucleus | 26.08 | 25.96 |
| VIT_08s0007g00500.t01 | Wine grape | nucleus | 26.08 | 25.47 |
| Solyc06g076270.2.1 | Tomato | nucleus | 26.53 | 25.43 |
| KRH30983 | Soybean | nucleus | 25.34 | 25.04 |
| KRH29783 | Soybean | nucleus | 25.48 | 24.78 |
| KRH23087 | Soybean | nucleus | 26.23 | 24.51 |
| CDX86474 | Canola | nucleus | 20.12 | 24.24 |
| KRH10245 | Soybean | nucleus | 25.78 | 24.03 |
| Solyc12g027690.1.1 | Tomato | extracellular | 5.51 | 23.87 |
| Solyc12g027710.1.1 | Tomato | cytosol | 7.9 | 21.9 |
| CDY33039 | Canola | nucleus | 24.59 | 19.95 |
| CDX80268 | Canola | nucleus | 24.44 | 19.81 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G432500.1 | EnsemblPlantsGene:TraesCS6B01G432500 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | InterPro:Ubiquitin-like_domsf |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF37 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | SUPFAM:SSF54236 | TIGR:cd11660 | MapMan:15.5.2.2 | : | : |
Description
No Description!
Coordinates
chr6B:+:701863055..701866680
Molecular Weight (calculated)
72839.1 Da
IEP (calculated)
7.298
GRAVY (calculated)
-0.490
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFRKKSEGG SVVRRPRKRR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST ESDQDVAAAS HNSDRAAVKA EQFHEAPQLN STALENDCCR
101: GYTVGCDCIC APLGETSIRK TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL LDCGLGTIPE YGTIGVCHPC
201: FPTSADVKQV HQATPAIIGS LVDGNAAALH GLVDTMDLDI KPSVLNSESS SGVHLGGHDN GHNSSPFYPV QVQHAADIDN DEKSTRCVHP STSGSKGGHL
301: SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA
401: SEGCNVKFII KSFNIPELSI EVPENATVGS LKRIVMDAVT SKIEGSLSVS VLLQGEIIQD DNKTLHQAGI CHGAKPDSIG FTLECEAKQD SRPSGLAPEE
501: MDSAGPSVVN PLSKIKFEQP FISCTLGDYP CEGAAQVRSE ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK
601: NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQGLLDRV LAAQAYWTVH HAKRDEEEGR D
101: GYTVGCDCIC APLGETSIRK TEDLSTQNVA DTVEGSLIEK ADADNLLTQN VADAAAEPLI EKKPDVFAEG SLVSCTKPSL LDCGLGTIPE YGTIGVCHPC
201: FPTSADVKQV HQATPAIIGS LVDGNAAALH GLVDTMDLDI KPSVLNSESS SGVHLGGHDN GHNSSPFYPV QVQHAADIDN DEKSTRCVHP STSGSKGGHL
301: SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFGGKKI SATRRRAQMQ RMLKTKKVVE CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA
401: SEGCNVKFII KSFNIPELSI EVPENATVGS LKRIVMDAVT SKIEGSLSVS VLLQGEIIQD DNKTLHQAGI CHGAKPDSIG FTLECEAKQD SRPSGLAPEE
501: MDSAGPSVVN PLSKIKFEQP FISCTLGDYP CEGAAQVRSE ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK
601: NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQGLLDRV LAAQAYWTVH HAKRDEEEGR D
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Arabidopsis Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.