Factsheet for TraesCS6A01G392300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G378100.1	Wheat	nucleus	97.02	97.02
TraesCS6B01G432500.1	Wheat	nucleus	96.42	96.42
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	85.69	74.0
TraesCS3A01G528500.1	Wheat	nucleus, plastid	43.82	45.16
GSMUA_Achr8P20810_001	Banana	nucleus	29.96	30.88
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	29.66	30.85
AT3G46590.2	Thale cress	nucleus	25.04	30.38
Os02t0817800-03	Rice	nucleus	28.02	29.7
TraesCS4A01G096700.1	Wheat	nucleus	30.1	29.23
AT5G59430.2	Thale cress	nucleus	25.04	29.07
Bra002566.1-P	Field mustard	nucleus	24.59	29.0
VIT_06s0004g04940.t01	Wine grape	nucleus	29.66	28.59
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	29.66	28.27
GSMUA_Achr7P15090_001	Banana	nucleus	29.06	28.14
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	29.66	27.95
PGSC0003DMT400060234	Potato	nucleus	28.17	27.43
GSMUA_Achr10P...	Banana	cytosol, plastid	3.73	27.17
CDY06712	Canola	nucleus	23.99	27.01
Solyc05g054410.2.1	Tomato	nucleus	27.57	26.85
Bra015585.1-P	Field mustard	nucleus	23.84	26.76
KRH24782	Soybean	nucleus	24.89	26.59
Solyc04g011650.2.1	Tomato	nucleus	26.38	26.54
PGSC0003DMT400077969	Potato	nucleus	27.42	26.47
PGSC0003DMT400005476	Potato	nucleus	27.27	26.45
Solyc06g005590.2.1	Tomato	nucleus	27.12	26.42
KRG97906	Soybean	nucleus	26.53	26.41
Bra030689.1-P	Field mustard	nucleus	23.84	26.36
CDY10282	Canola	nucleus	23.55	26.33
KRG99966	Soybean	nucleus	23.55	26.2
AT1G07540.1	Thale cress	nucleus	24.59	26.19
PGSC0003DMT400016260	Potato	nucleus	26.08	26.12
CDY15617	Canola	nucleus	22.95	26.1
KRH49110	Soybean	nucleus	23.4	25.91
VIT_08s0007g00500.t01	Wine grape	nucleus	26.38	25.76
KRH30983	Soybean	nucleus	25.78	25.48
Solyc06g076270.2.1	Tomato	nucleus	26.38	25.29
KRH29783	Soybean	nucleus	25.63	24.93
KRH23087	Soybean	nucleus	26.23	24.51
CDX86474	Canola	nucleus	20.12	24.24
Solyc12g027690.1.1	Tomato	extracellular	5.51	23.87
KRH10245	Soybean	nucleus	25.48	23.75
Solyc12g027710.1.1	Tomato	cytosol	8.2	22.73
CDY33039	Canola	nucleus	24.59	19.95
CDX80268	Canola	nucleus	24.44	19.81

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	EnsemblPlantsGene:TraesCS6A01G392300	EnsemblPlants:TraesCS6A01G392300.1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
TIGR:cd01769	TIGR:cd11660	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:+:606961302..606965840

Molecular Weight (calculated)

73051.4 Da

IEP (calculated)

7.551

GRAVY (calculated)

-0.504

Length

671 amino acids

Sequence
(BLAST)

001: MVFRKKSEGG SVVRRPRKPR DTTLAPVKRS ARLKKKQMYA LDLLATVAES LSSDEDDYST ESDQDGAEAS HNSYRIAVKS EQFDEAPQLN STALENDCSR
101: GYTVGCDGIC ASLGQTSIRK TEDLSTQNVA DTVEGSLIEK ADADNLLTQN IADAAAEPLI EKKPDVFAEG SLVSCTKPSL LDCGLGTIPE YGTIGVCHPC
201: FPTSADVKQV HQATPAIIRS LVDGNAAALH GLVDTMDLDV KPSVLNSESS SGVHLGGHDN GHKASPLYPV QVQHAADIDN DEKSTRCVLP STSGSKGGYL
301: SYKGDCRTRR LLSTRMRKAA RNKMCGELPN KGSKFCGKKI SATRRRAQMQ RMLKTKKVVE CYSAQPSDEG VLTETSGTSC SRGGQDPTCA SESSQRKPCA
401: SEGCNVKFII KSFNIPELSI EVPENSTVGS LKRIVMDAVT SKIEGSLSVS VLLQGKIIQD DNKTLHQAGI CHGAKPDSIG FTLECEAKQD SRPSGLAPEE
501: MDSAGPSVVN PLSKIKFEQP FISCTLGDYP YEGAAQVRSE ICQAIVPYGT SNPDALAIVP VVPRSRQRDF GQRRKRRPFS VAEVELLVEA VELLGFGRWK
601: NVKNHAFRDN EERTYVDLKD KWKNLVHTAS IPPQLRRGRA IPPQDLLDRV LAAQAYWTVH HAKRDEEEGR D

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.