CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49110	Soybean	nucleus	83.75	83.33
GSMUA_Achr8P20810_001	Banana	nucleus	42.45	39.32
VIT_08s0007g00500.t01	Wine grape	nucleus	42.62	37.41
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	39.64	37.05
KRG97906	Soybean	nucleus	40.3	36.05
KRH29783	Soybean	nucleus	40.63	35.51
KRH30983	Soybean	nucleus	39.97	35.49
KRH23087	Soybean	nucleus	41.79	35.1
KRH10245	Soybean	nucleus	41.46	34.72
GSMUA_Achr7P15090_001	Banana	nucleus	39.64	34.49
KRH24782	Soybean	nucleus	35.49	34.08
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.8	33.71
KXG39691	Sorghum	nucleus, plastid	38.81	33.14
Os03t0274300-01	Rice	nucleus	37.98	33.09
HORVU4Hr1G059800.2	Barley	nucleus	36.15	31.55
TraesCS4B01G207700.1	Wheat	nucleus	35.99	31.36
TraesCS4D01G208600.1	Wheat	nucleus	35.82	31.26
TraesCS4A01G096700.1	Wheat	nucleus	35.66	31.11
TraesCS3D01G533700.1	Wheat	nucleus, plastid	32.17	29.85
TraesCS3A01G528500.1	Wheat	nucleus, plastid	32.01	29.65
TraesCS3B01G597500.1	Wheat	nucleus, plastid	32.01	29.65
HORVU3Hr1G115540.2	Barley	nucleus, plastid	32.17	29.48
Zm00001d047808_P001	Maize	nucleus, plastid	36.48	29.45
GSMUA_Achr10P...	Banana	cytosol, plastid	4.48	29.35
Zm00001d028608_P006	Maize	nucleus	33.33	28.88
EES10985	Sorghum	mitochondrion	30.18	28.0
TraesCS6D01G378100.1	Wheat	nucleus	26.7	23.99
TraesCS6B01G432500.1	Wheat	nucleus	26.37	23.7
TraesCS6A01G392300.1	Wheat	nucleus	26.2	23.55
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	24.05	18.66
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	24.54	16.32
Os02t0817800-03	Rice	nucleus	9.95	9.48

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100801280	MapMan:15.5.2.2	EMBL:ACUP02011355	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G182400
GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K7MT46	EnsemblPlants:KRG99966	ProteinID:KRG99966	ProteinID:KRG99966.1	ProteinID:KRG99967.1
InterPro:Myb_dom	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF56	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI000233E270	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:43936689..43942842

Molecular Weight (calculated)

67344.6 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.716

Length

603 amino acids

Sequence
(BLAST)

001: MVLQKRLNYG FNGYQVPVIP RASRSARGRG TIRKKPDSSQ IQAFEILASV AGNFLQENES SNPENVVLAK DPRTLSGTNI KDKHGDERSF KGALFEHGAC
101: SEIASVFVPS MQGKHDNHRV MGDSSFLDNH LEGQGQNVPE REDERIKGRS VNGKTIHIKG CSNGLIEPGH GVSKHCSSAN NVEKPSLEGR KPLDSFPKCF
201: TSRKLVNRDD DETLDRCTQL NSKNNTSGAP PDTPKLKDAS PFISDENNSR DISELESLQR MYPFKKRKFF NQTSSSASDR GSQCQGMFDS SDTIRVNGTN
301: HAIEESSSIV GQQAHFGSRG CNVKLSIKSF KVPELFIDIP ETATIGSLKR TVMEAVTAIL GDELHVGILL QGKKVRDDSK TLIQTGISQD DKRHRLGFML
401: EPRHTQSPSS YNDDPCYPTT SSRQKLSRQS TSVTLQQGTY NVSKERSMIK IESYAEGDLN MVTSLADTSA NNNMSKCRAL VAVPAINMET LAVVPFRRKS
501: ENPDFAQRRI RRPFSVLEVE ALVQAVEKLG TGRWRDVKQR AFDHAKHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLAAHAY WSQQQCKHQL
601: KPL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.