Factsheet for HORVU4Hr1G059800.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G207700.1	Wheat	nucleus	98.12	97.98
TraesCS4D01G208600.1	Wheat	nucleus	97.83	97.83
TraesCS4A01G096700.1	Wheat	nucleus	97.54	97.54
Os03t0274300-01	Rice	nucleus	81.62	81.5
KXG39691	Sorghum	nucleus, plastid	74.96	73.37
Zm00001d028608_P006	Maize	nucleus	67.44	66.95
Zm00001d047808_P001	Maize	nucleus, plastid	68.74	63.59
GSMUA_Achr8P20810_001	Banana	nucleus	42.69	45.31
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	41.1	44.03
GSMUA_Achr7P15090_001	Banana	nucleus	43.42	43.29
VIT_06s0004g04940.t01	Wine grape	nucleus	42.11	41.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.69	41.43
Bra015585.1-P	Field mustard	nucleus	34.73	40.13
CDY06712	Canola	nucleus	34.3	39.77
AT3G46590.2	Thale cress	nucleus	31.4	39.24
Solyc06g005590.2.1	Tomato	nucleus	39.07	39.19
PGSC0003DMT400005476	Potato	nucleus	38.93	38.87
CDY10282	Canola	nucleus	33.72	38.83
HORVU3Hr1G115540.2	Barley	nucleus, plastid	35.89	37.69
AT1G07540.1	Thale cress	nucleus	33.86	37.14
CDY15617	Canola	nucleus	31.69	37.12
AT5G59430.2	Thale cress	nucleus	30.97	37.02
KRH23087	Soybean	nucleus	38.21	36.77
Bra030689.1-P	Field mustard	nucleus	32.27	36.74
KRH10245	Soybean	nucleus	38.21	36.67
Solyc05g054410.2.1	Tomato	nucleus	36.47	36.57
KRH29783	Soybean	nucleus	36.47	36.52
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	37.05	36.36
KRG99966	Soybean	nucleus	31.55	36.15
Solyc06g076270.2.1	Tomato	nucleus	36.32	35.86
PGSC0003DMT400060234	Potato	nucleus	35.75	35.85
PGSC0003DMT400077969	Potato	nucleus	36.03	35.83
KRH49110	Soybean	nucleus	30.97	35.31
KRG97906	Soybean	nucleus	34.44	35.31
KRH24782	Soybean	nucleus	31.98	35.19
Bra002566.1-P	Field mustard	nucleus	28.94	35.15
KRH30983	Soybean	nucleus	34.44	35.05
PGSC0003DMT400016260	Potato	nucleus	33.86	34.93
Solyc04g011650.2.1	Tomato	nucleus	33.57	34.78
VIT_08s0007g00500.t01	Wine grape	nucleus	33.86	34.06
GSMUA_Achr10P...	Banana	cytosol, plastid	4.49	33.7
CDX86474	Canola	nucleus	27.06	33.57
Solyc12g027690.1.1	Tomato	extracellular	6.95	30.97
Solyc12g027710.1.1	Tomato	cytosol	8.54	24.38
CDX80268	Canola	nucleus	28.8	24.03
CDY33039	Canola	nucleus	28.65	23.94
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	26.34	23.42

Protein Annotations

EnsemblPlants:HORVU4Hr1G059800.2	EnsemblPlantsGene:HORVU4Hr1G059800	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR21717	PANTHER:PTHR21717:SF61	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	UniParc:UPI0002962690	UniProt:M0XGF6	MapMan:15.5.2.2	:	:

Description

No Description!

Coordinates

chrchr4H:+:500954077..500959154

Molecular Weight (calculated)

75111.7 Da

IEP (calculated)

8.887

GRAVY (calculated)

-0.629

Length

691 amino acids

Sequence
(BLAST)

001: MVFQKRTSSE MESCGGSHVA EMPRVPKSAR GKRSVRKKES QGQAMCAFDL LATVAGKLLD EGEGSLGNMS AGSPVLAASA KDVCVKQEQC DEEGKHLKND
101: VMDQDSCNES ALISHIASQR LADHHARKGE DLNEVPKAKS EAVDKEPSMI SCTKADLGSN FGAIADRWSP ESVESGAFTG DAAANVMALA AAAFNKNAPD
201: MYNLLDPMDV DVKPPPLVSS DSTGEMPLYG GKIHRSVSFP RGPKGGAECS VDRENDDDDD KSSGCTHSST ATNRGFRPNC TADQSRVKKF LACKYRKVAP
301: ARMHKGDLSY SDADRKPSFR NKKMYYTRQR TQRSTFKRRK MLDRHSTLMP EEFAKSNAKR TTKVNAREPH AASLEANKGS NSTPFHGSCK SNDCHVKLKI
401: KSFKVPELLI EIPETASVGS LKKTVLEAVN AMLGGGLRVG VLHHGKKIRD DSKTLIQAGI GHDDMLDNIG FSLEPNCTRH SSQVAAPEDI EFLETVETTE
501: PLARIAPADS SSKHGEVDAS QELALTPLTA NYQGNDHDSV HSPGGISSPE KASANSRAIV PVTPVDSSAG AIVPANKAKR SAEQGQRRIR RPFSVAEVEA
601: LVLAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQDLL DRVLAAQSYW SQQQAKLQPK TPPLAEARLL T

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.