Factsheet for PGSC0003DMT400016260

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003538
PGSC0003DMT400003545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	PGSC0003DMT400003538	AT3G01320.1	19962994
AT5G13820.1	PGSC0003DMT400003545	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011650.2.1	Tomato	nucleus	92.84	93.25
PGSC0003DMT400060234	Potato	nucleus	56.57	55.01
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	45.67	43.47
CDX91094	Canola	nucleus	34.78	41.83
KRG97906	Soybean	nucleus	41.94	41.69
KRH30983	Soybean	nucleus	42.24	41.68
CDX85624	Canola	mitochondrion	33.58	41.28
Bra023437.1-P	Field mustard	nucleus	34.93	40.91
CDY50529	Canola	nucleus	36.72	40.53
AT5G13820.1	Thale cress	nucleus	38.66	40.47
AT3G12560.2	Thale cress	nucleus	37.31	40.39
Bra006218.1-P	Field mustard	mitochondrion	36.27	39.71
Bra038729.1-P	Field mustard	nucleus	36.12	39.67
CDY42156	Canola	nucleus	36.12	39.48
GSMUA_Achr8P20810_001	Banana	nucleus	38.36	39.48
CDX70522	Canola	nucleus	34.03	39.45
CDY50353	Canola	nucleus	35.67	39.31
CDX78540	Canola	nucleus	35.52	38.95
CDY08423	Canola	nucleus	35.67	38.61
Bra034751.1-P	Field mustard	nucleus	34.93	38.55
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	36.57	37.98
CDY68172	Canola	nucleus	31.79	37.77
CDX69626	Canola	nucleus	33.13	37.44
PGSC0003DMT400005476	Potato	nucleus	38.66	37.43
Bra008800.1-P	Field mustard	nucleus	32.99	37.27
GSMUA_Achr7P15090_001	Banana	nucleus	37.76	36.51
Os03t0274300-01	Rice	nucleus	36.72	35.55
PGSC0003DMT400077969	Potato	nucleus	36.57	35.25
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	37.31	35.11
HORVU4Hr1G059800.2	Barley	nucleus	34.93	33.86
TraesCS4B01G207700.1	Wheat	nucleus	34.93	33.81
TraesCS4D01G208600.1	Wheat	nucleus	34.78	33.72
TraesCS4A01G096700.1	Wheat	nucleus	34.78	33.72
KXG39691	Sorghum	nucleus, plastid	35.22	33.43
TraesCS3A01G528500.1	Wheat	nucleus, plastid	29.85	30.72
GSMUA_Achr10P...	Banana	cytosol, plastid	4.18	30.43
TraesCS3B01G597500.1	Wheat	nucleus, plastid	29.55	30.41
TraesCS3D01G533700.1	Wheat	nucleus, plastid	29.4	30.31
Zm00001d047808_P001	Maize	nucleus, plastid	33.43	29.99
HORVU3Hr1G115540.2	Barley	nucleus, plastid	29.25	29.79
Zm00001d028608_P006	Maize	nucleus	30.75	29.6
EES10985	Sorghum	mitochondrion	28.66	29.54
TraesCS6A01G392300.1	Wheat	nucleus	26.12	26.08
TraesCS6B01G432500.1	Wheat	nucleus	25.97	25.93
TraesCS6D01G378100.1	Wheat	nucleus	25.97	25.93
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.13	19.95
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	25.37	18.74
Os02t0817800-03	Rice	nucleus	11.04	11.69

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:102578199	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	UniProt:M1A7D5
InterPro:Myb_dom	EnsemblPlantsGene:PGSC0003DMG400006353	PGSC:PGSC0003DMG400006353	EnsemblPlants:PGSC0003DMT400016260	PFscan:PS50053	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236
UniParc:UPI000294DFD5	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006346713.1	SEG:seg	:

Description

Telomere binding protein TBP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006353]

Coordinates

chr4:-:7471993..7476619

Molecular Weight (calculated)

74801.3 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.719

Length

670 amino acids

Sequence
(BLAST)

001: MSSKKRVRHG FSGYEFPVIP KAPRSVRRRH SHNNIDNDQI CAFELLAAVA GELLQESESS ACSNAAVGKD ELSDCREVVK REQLKEDKAV KSECFDQGSC
101: VESAHLPEPA VQEPNLKYSL DKPYHIENNI FHTEVEGGSS NLEDVCDKRT DTGTQKQLTD DGKQTEDLTV ANSCSVKGPI EKHVNNNSAI NSDSSVQLPW
201: YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF RQTSRIGYKS MRKMLTSRRW KVAPQLKAGE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS
301: KRRKLCHYSS VVAYDQQANS KSISNSPEKG IKRDITGAGA SASVRNHRKK DSNVKFSIKS FKVPELFIEV PENETVGSLK RTVMEAVKTI LGSGLRVGMV
401: VQGKKVRDDN KTLQQAGISQ SGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSSPSAPS ETRLDEHDED YHELALSPTN
501: PIDPPTDVAI SGSRALVVVS PLNAEAHPVV PMNPKNRCSE LSQRRTRRPF SVAEVEALVE AVEQLGTGRW RDVKICAFEY ADHRTYVDVK DKWKTLVHTA
601: SIAPQQRRGE PVPQELLDRV LIAHDYWSKQ HGKHQAEPSK MTEAQMQNVG ALENNNNSVS MPSKMVGSAI

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.