Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85624 | Canola | mitochondrion | 85.46 | 87.34 |
| CDX78540 | Canola | nucleus | 64.99 | 59.25 |
| AT5G13820.1 | Thale cress | nucleus | 66.43 | 57.81 |
| CDX70522 | Canola | nucleus | 58.71 | 56.57 |
| CDY68172 | Canola | nucleus | 56.37 | 55.67 |
| CDX69626 | Canola | nucleus | 58.53 | 54.97 |
| CDY50529 | Canola | nucleus | 54.04 | 49.59 |
| CDY50353 | Canola | nucleus | 53.86 | 49.34 |
| CDY42156 | Canola | nucleus | 53.14 | 48.29 |
| CDY08423 | Canola | nucleus | 53.32 | 47.98 |
| CDY30842 | Canola | nucleus | 21.54 | 42.55 |
| KRH30983 | Soybean | nucleus | 46.32 | 38.0 |
| KRG97906 | Soybean | nucleus | 45.96 | 37.98 |
| Solyc05g054410.2.1 | Tomato | nucleus | 46.14 | 37.3 |
| PGSC0003DMT400060234 | Potato | nucleus | 45.78 | 37.01 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.24 | 35.8 |
| PGSC0003DMT400016260 | Potato | nucleus | 41.83 | 34.78 |
| Solyc04g011650.2.1 | Tomato | nucleus | 41.47 | 34.63 |
| CDY15617 | Canola | nucleus | 36.45 | 34.41 |
| CDY06712 | Canola | nucleus | 36.62 | 34.23 |
| CDY10282 | Canola | nucleus | 36.27 | 33.67 |
| CDX86474 | Canola | nucleus | 30.88 | 30.88 |
| CDX80268 | Canola | nucleus | 34.29 | 23.07 |
| CDY33039 | Canola | nucleus | 34.11 | 22.97 |
Protein Annotations
| EnsemblPlants:CDX91094 | EnsemblPlantsGene:GSBRNA2T00151873001 | Gene3D:1.10.246.220 | GO:A0A078DRI7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | PFscan:PS51294 | ProteinID:CDX91094 | ProteinID:CDX91094.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EB4389 | MapMan:15.5.2.2 | : |
Description
BnaC02g05030D
Coordinates
chrLK031865:-:744394..747627
Molecular Weight (calculated)
62136.1 Da
IEP (calculated)
7.670
GRAVY (calculated)
-0.697
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIKRRFDHV FDFSSIPKAP RSTRRKVLSS KNDGVDDIRT TAFDLLASLA GKLLEESQSS STSSSTNAFV EGKGNIKQED VEDDDVKPCE SELASKSPPS
101: DITSETPLEQ TRVSDCERGL GLKPCGNKKE DCDDITEETG VDIEKREVKT PPGTDGVLNG SSEGYRNQSK LVCRDDDENY CKYHRFSDGC RRSNRPLTRV
201: GHRRMMTKYG RAVPRDSRTD GCVKALYRKR KLCYGYNPWR HETVHRKRRL SDGGVSSESV TISPEKRGSV KLSINSFRIP ELFIEVPDTA TVGSLKRTVM
301: EAVTALLGDG IRIGVLVQGK KVRDDNNTLS QTGLSCRENL SNLGFTLEPG HVPLCSESHV ISMPTDSTDF SERSFDSRIP FHLQDADHLI SSGNCVENNQ
401: ELVPYQSDVS ADEQQQPSSD SRALVPVSAL EPEALAIVPL NEKPKRTEVS QRRTRRPFSV TEVEALVAAV EELGTGRWRD VKLRSFDDAS HRTYVDLKDK
501: WKTLVHTASI TPQQRRGEPV PQELLDRVLA AHRCWSQHQM KQNGKLQAAA IMVGSSM
101: DITSETPLEQ TRVSDCERGL GLKPCGNKKE DCDDITEETG VDIEKREVKT PPGTDGVLNG SSEGYRNQSK LVCRDDDENY CKYHRFSDGC RRSNRPLTRV
201: GHRRMMTKYG RAVPRDSRTD GCVKALYRKR KLCYGYNPWR HETVHRKRRL SDGGVSSESV TISPEKRGSV KLSINSFRIP ELFIEVPDTA TVGSLKRTVM
301: EAVTALLGDG IRIGVLVQGK KVRDDNNTLS QTGLSCRENL SNLGFTLEPG HVPLCSESHV ISMPTDSTDF SERSFDSRIP FHLQDADHLI SSGNCVENNQ
401: ELVPYQSDVS ADEQQQPSSD SRALVPVSAL EPEALAIVPL NEKPKRTEVS QRRTRRPFSV TEVEALVAAV EELGTGRWRD VKLRSFDDAS HRTYVDLKDK
501: WKTLVHTASI TPQQRRGEPV PQELLDRVLA AHRCWSQHQM KQNGKLQAAA IMVGSSM
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.