Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69626 | Canola | nucleus | 77.48 | 73.69 |
| CDX85624 | Canola | mitochondrion | 55.32 | 57.25 |
| CDX91094 | Canola | nucleus | 55.67 | 56.37 |
| CDX78540 | Canola | nucleus | 60.28 | 55.65 |
| CDX70522 | Canola | nucleus | 56.03 | 54.67 |
| AT5G13820.1 | Thale cress | nucleus | 60.64 | 53.44 |
| CDY50529 | Canola | nucleus | 48.4 | 44.98 |
| CDY50353 | Canola | nucleus | 48.23 | 44.74 |
| CDY08423 | Canola | nucleus | 48.94 | 44.59 |
| CDY42156 | Canola | nucleus | 48.4 | 44.54 |
| CDY30842 | Canola | nucleus | 21.63 | 43.26 |
| KRH30983 | Soybean | nucleus | 43.62 | 36.23 |
| KRG97906 | Soybean | nucleus | 42.73 | 35.76 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 43.09 | 34.52 |
| PGSC0003DMT400060234 | Potato | nucleus | 41.13 | 33.67 |
| CDY15617 | Canola | nucleus | 34.93 | 33.39 |
| CDY06712 | Canola | nucleus | 35.28 | 33.39 |
| Solyc05g054410.2.1 | Tomato | nucleus | 40.6 | 33.24 |
| CDY10282 | Canola | nucleus | 34.75 | 32.67 |
| PGSC0003DMT400016260 | Potato | nucleus | 37.77 | 31.79 |
| Solyc04g011650.2.1 | Tomato | nucleus | 37.06 | 31.33 |
| CDX86474 | Canola | nucleus | 29.61 | 29.98 |
| CDY33039 | Canola | nucleus | 34.4 | 23.46 |
| CDX80268 | Canola | nucleus | 34.4 | 23.43 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078JRV9 | UniProt:A0A078JRV9 | EnsemblPlants:CDY68172 | ProteinID:CDY68172 |
| ProteinID:CDY68172.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00070014001 |
| InterPro:Homeobox-like_sf | InterPro:IPR013087 | InterPro:IPR017930 | InterPro:Myb_dom | ScanProsite:PS00028 | PFscan:PS50157 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| SUPFAM:SSF54236 | UniParc:UPI0004EEE710 | InterPro:Ubiquitin-like_domsf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
BnaAnng26340DBnaAnng26340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRV9]
Coordinates
chrLK036932:+:2933..5947
Molecular Weight (calculated)
62998.5 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.692
Length
564 amino acids
Sequence
(BLAST)
(BLAST)
001: MHQREMVVNS DFDFSSFPKA PRSIRRKVPS SQRRDDVDCG MMRAIDLLAS VAEKLREEGE TSSNSTNAFE EGYYNQNHLA GKIKQEHQAH LASSKSPRKR
101: IVNLDPPLGC GNKKEDCEFH VESGGLTEET CVVNNVDAGL EDGGLISLKD PSPEPVHLDG VPNEYRNRSK LVCRDDDENY CKCYKCKDKC NKSYRPPLTW
201: AGHRRAVHRS QCFEGTKTDG CLYRKRKLGN GYNPRKHETV HKKRRLSDKG LVVNSDGGGL TSESVTNSTE KRESENGVLS DAIGLPSEDS RVKFSIKSLR
301: IPELFIEVPE TATVGSLKMT VMEAVSALLD DGISIGVLVQ GKKVRDDNNT LSQTGLSCRE NLGNLGFTLE PGPEKLLLLL CMDKCEISFD LARSAANCVE
401: NNNQELVPYQ MDISADEKQP SSDSRALVPV SALEPEALAI VPFKEKPKRT TELSQRRTRR PFSVTEVEAL VHAVEELGTG RWRDVKLRSF DDASHRTYVD
501: LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLAAHRYWT QHPLKQNGKH QAAATMVTES APSM
101: IVNLDPPLGC GNKKEDCEFH VESGGLTEET CVVNNVDAGL EDGGLISLKD PSPEPVHLDG VPNEYRNRSK LVCRDDDENY CKCYKCKDKC NKSYRPPLTW
201: AGHRRAVHRS QCFEGTKTDG CLYRKRKLGN GYNPRKHETV HKKRRLSDKG LVVNSDGGGL TSESVTNSTE KRESENGVLS DAIGLPSEDS RVKFSIKSLR
301: IPELFIEVPE TATVGSLKMT VMEAVSALLD DGISIGVLVQ GKKVRDDNNT LSQTGLSCRE NLGNLGFTLE PGPEKLLLLL CMDKCEISFD LARSAANCVE
401: NNNQELVPYQ MDISADEKQP SSDSRALVPV SALEPEALAI VPFKEKPKRT TELSQRRTRR PFSVTEVEAL VHAVEELGTG RWRDVKLRSF DDASHRTYVD
501: LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLAAHRYWT QHPLKQNGKH QAAATMVTES APSM
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.