CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93437
KRH18559
KRH18561

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	KRG93437	AT3G01320.1	19962994
AT5G13820.1	KRH18559	AT3G01320.1	19962994
AT5G13820.1	KRH18561	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97906	Soybean	nucleus	85.86	86.5
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	50.96	49.15
CDX85624	Canola	mitochondrion	37.7	46.97
CDY50353	Canola	nucleus	41.97	46.88
AT3G12560.2	Thale cress	nucleus	42.71	46.85
CDY50529	Canola	nucleus	41.83	46.79
CDY08423	Canola	nucleus	42.42	46.53
CDX91094	Canola	nucleus	38.0	46.32
Bra038729.1-P	Field mustard	nucleus	41.53	46.23
PGSC0003DMT400060234	Potato	nucleus	46.83	46.15
CDY42156	Canola	nucleus	41.53	46.0
CDX70522	Canola	nucleus	38.73	45.5
Bra034751.1-P	Field mustard	nucleus	40.5	45.3
Solyc05g054410.2.1	Tomato	nucleus	45.8	45.14
Bra006218.1-P	Field mustard	mitochondrion	40.65	45.1
CDX78540	Canola	nucleus	40.06	44.52
Bra023437.1-P	Field mustard	nucleus	37.41	44.41
AT5G13820.1	Thale cress	nucleus	41.83	44.38
CDY68172	Canola	nucleus	36.23	43.62
GSMUA_Achr8P20810_001	Banana	nucleus	40.5	42.24
PGSC0003DMT400016260	Potato	nucleus	41.68	42.24
Solyc04g011650.2.1	Tomato	nucleus	41.38	42.13
CDX69626	Canola	nucleus	36.38	41.65
Bra008800.1-P	Field mustard	nucleus	36.23	41.48
KRG99966	Soybean	nucleus	35.49	39.97
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.85	39.84
GSMUA_Achr10P...	Banana	cytosol, plastid	5.3	39.13
GSMUA_Achr7P15090_001	Banana	nucleus	39.91	39.11
KRH29783	Soybean	nucleus	39.32	38.7
KRH49110	Soybean	nucleus	34.46	38.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.62	37.78
KRH24782	Soybean	nucleus	34.9	37.74
KRH23087	Soybean	nucleus	39.47	37.33
KRH10245	Soybean	nucleus	39.32	37.08
Os03t0274300-01	Rice	nucleus	36.23	35.55
KXG39691	Sorghum	nucleus, plastid	36.23	34.84
HORVU4Hr1G059800.2	Barley	nucleus	35.05	34.44
TraesCS4B01G207700.1	Wheat	nucleus	35.05	34.39
TraesCS4D01G208600.1	Wheat	nucleus	34.9	34.3
TraesCS4A01G096700.1	Wheat	nucleus	34.76	34.15
TraesCS3A01G528500.1	Wheat	nucleus, plastid	30.63	31.95
TraesCS3D01G533700.1	Wheat	nucleus, plastid	30.19	31.54
TraesCS3B01G597500.1	Wheat	nucleus, plastid	30.04	31.34
HORVU3Hr1G115540.2	Barley	nucleus, plastid	30.34	31.31
Zm00001d047808_P001	Maize	nucleus, plastid	34.32	31.19
Zm00001d028608_P006	Maize	nucleus	31.52	30.75
EES10985	Sorghum	mitochondrion	29.01	30.31
TraesCS6A01G392300.1	Wheat	nucleus	25.48	25.78
TraesCS6D01G378100.1	Wheat	nucleus	25.48	25.78
TraesCS6B01G432500.1	Wheat	nucleus	25.04	25.34
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	22.39	19.56
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	25.48	19.07
Os02t0817800-03	Rice	nucleus	11.34	12.16

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100814318	MapMan:15.5.2.2	EMBL:ACUP02007112	EnsemblPlantsGene:GLYMA_11G219500	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	UniProt:I1LMF7
InterPro:IPR017930	EnsemblPlants:KRH30983	ProteinID:KRH30983	ProteinID:KRH30983.1	InterPro:Myb_dom	PFscan:PS51294
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233D132	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:31426785..31431927

Molecular Weight (calculated)

75145.9 Da

IEP (calculated)

9.725

GRAVY (calculated)

-0.621

Length

679 amino acids

Sequence
(BLAST)

001: MVLKKRVDHG FDGLRVPVIP KAPRSARRRI AFKKAVEDGQ VCAIELLASL AGQLLQESEG SASSNASEGN HHPPFSQGVI EQDIQDGVKP LKKEEIHQGS
101: CVESTFKTEV ASQNSSQKPL SHTKTGHVSV NNSSDCCEKV EADVKSEIFE WDNKFGNYSN RLVETRENFR KSSDGKIKNG FKREQEAGSS CIRGSNLADK
201: CSLEGHLELY VSPALIDSKS NKKSPFHRKS FPSASFSRNG NGIKLGFRDD DENFLRCKKF CTKPKAFRSP RRIAHRRIRN LMSSKYWKTA PKLKDSELSR
301: SEFADLGVPR YHKRKTCYGF ERSQHNAIVK KRKFVDRVSG VTSDGGFSSE SVSNSPQKGM DGDKPSSSAK LHVPKAKDSH VKFSIKSIRI PELYIEVPET
401: STVGSLKRTI VEAVMAILGG GAHVGVLLQG KKVRDDNRTL VQTGISCNEN LDTLSFMLEP TSLQASPTVC VGDPSSQCET SQPTRSTEIP VLDSGITDTL
501: HDSPLLTYPG NLIESNHEST SSLADTTLDK LTPDSRAIVV VPATTETLAV VPVSQKTKRS EFVQRRTRRP FSVTEVEALV HAVEELGTGR WRDVKLRAFE
601: NADHRTYVDL KDKWKTLVHT ATISPQQRRG EPVPQELLDR VLAAHAFWSQ HQAKQHGKHQ AGPGTLKITE ASAERPCVC

Best Arabidopsis Sequence Match ( AT3G12560.2 )
(BLAST)

001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV

Arabidopsis Description

TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.