Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08423 | Canola | nucleus | 91.84 | 90.95 |
| Bra034751.1-P | Field mustard | nucleus | 85.32 | 86.16 |
| AT3G12560.2 | Thale cress | nucleus | 72.92 | 72.21 |
| CDY50529 | Canola | nucleus | 70.47 | 71.17 |
| CDY50353 | Canola | nucleus | 70.47 | 71.05 |
| CDX91094 | Canola | nucleus | 48.29 | 53.14 |
| CDX78540 | Canola | nucleus | 52.53 | 52.7 |
| CDX70522 | Canola | nucleus | 49.59 | 52.6 |
| CDX85624 | Canola | mitochondrion | 46.66 | 52.48 |
| CDY68172 | Canola | nucleus | 44.54 | 48.4 |
| CDX69626 | Canola | nucleus | 46.17 | 47.72 |
| CDY30842 | Canola | nucleus | 19.74 | 42.91 |
| KRG97906 | Soybean | nucleus | 46.49 | 42.28 |
| KRH30983 | Soybean | nucleus | 46.0 | 41.53 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 46.17 | 40.2 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.56 | 38.75 |
| Solyc05g054410.2.1 | Tomato | nucleus | 43.07 | 38.32 |
| CDY06712 | Canola | nucleus | 35.73 | 36.74 |
| CDY15617 | Canola | nucleus | 34.91 | 36.27 |
| PGSC0003DMT400016260 | Potato | nucleus | 39.48 | 36.12 |
| Solyc04g011650.2.1 | Tomato | nucleus | 38.83 | 35.68 |
| CDY10282 | Canola | nucleus | 34.91 | 35.67 |
| CDX86474 | Canola | nucleus | 29.85 | 32.85 |
| CDY33039 | Canola | nucleus | 34.42 | 25.51 |
| CDX80268 | Canola | nucleus | 34.26 | 25.36 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078HWP4 | UniProt:A0A078HWP4 | EnsemblPlants:CDY42156 | ProteinID:CDY42156 |
| ProteinID:CDY42156.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00074339001 | InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFscan:PS50053 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| SUPFAM:SSF54236 | UniParc:UPI0004EAB54C | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
BnaC05g40630DBnaC05g40630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWP4]
Coordinates
chrLK032516:-:153003..156378
Molecular Weight (calculated)
67855.0 Da
IEP (calculated)
9.125
GRAVY (calculated)
-0.700
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLDCV SVAFDYPNIP RAPRSCRRKV QNKRTDDNDD AQMCAMDLLA SLAGKILEEG QSSSASSNAF EGNAHENFGK EVKTEREDHD KPLKSESSDQ
101: GNSVSMPTYE NTSDKCVVNS FLFPDNDGIL ERTPPMSDHK KIHGETGDVN VNPGFEQREA TGGLTANTCN LEDKTALDVQ FPKPVCVDGD DLKSPSCVNM
201: IPNGSLARHG NHTNLVRDDD EKLYSSRKCS NKFTSYKSPA IRRIRKSKYS KQVSKDFGHY RADVGIKALY RKRKSCYGYN TWKHETIYKR RRSPDRSSVV
301: TSDGGLSNGS VSKLPEKRKS VKLSIKSFRI PELFIEVPET ATVGSLKRTV MEAVSVLLSG GIRVGVLVHG KKVRDDKRTL SQTGISSEEN LSNLGFTLEP
401: GGTSNGPIPL CSKDPVVPTT EPTSLCERSA AASPNADDVI NSGSIVDNKL ELVPYQSEIS VDEPSSDSRA LVPLPALEEV KALAIVPLNQ KPKRTELAQR
501: RARRPFSVTE VEALVQAVEE LGTGRWRDVK LRAFENADHR TYVDLKDKWK TLVHTASISP QQRRGEPVPQ ELLDRVLKAY GYWSQHQGKH QARGAPKDPD
601: MNRGRALDSG VSV
101: GNSVSMPTYE NTSDKCVVNS FLFPDNDGIL ERTPPMSDHK KIHGETGDVN VNPGFEQREA TGGLTANTCN LEDKTALDVQ FPKPVCVDGD DLKSPSCVNM
201: IPNGSLARHG NHTNLVRDDD EKLYSSRKCS NKFTSYKSPA IRRIRKSKYS KQVSKDFGHY RADVGIKALY RKRKSCYGYN TWKHETIYKR RRSPDRSSVV
301: TSDGGLSNGS VSKLPEKRKS VKLSIKSFRI PELFIEVPET ATVGSLKRTV MEAVSVLLSG GIRVGVLVHG KKVRDDKRTL SQTGISSEEN LSNLGFTLEP
401: GGTSNGPIPL CSKDPVVPTT EPTSLCERSA AASPNADDVI NSGSIVDNKL ELVPYQSEIS VDEPSSDSRA LVPLPALEEV KALAIVPLNQ KPKRTELAQR
501: RARRPFSVTE VEALVQAVEE LGTGRWRDVK LRAFENADHR TYVDLKDKWK TLVHTASISP QQRRGEPVPQ ELLDRVLKAY GYWSQHQGKH QARGAPKDPD
601: MNRGRALDSG VSV
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.