Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006218.1-P | Field mustard | mitochondrion | 94.6 | 94.44 |
| CDX70522 | Canola | nucleus | 75.78 | 80.1 |
| CDX91094 | Canola | nucleus | 59.25 | 64.99 |
| CDX85624 | Canola | mitochondrion | 56.46 | 63.3 |
| AT5G13820.1 | Thale cress | nucleus | 64.81 | 61.88 |
| CDY68172 | Canola | nucleus | 55.65 | 60.28 |
| CDX69626 | Canola | nucleus | 57.77 | 59.53 |
| CDY50529 | Canola | nucleus | 53.03 | 53.38 |
| CDY50353 | Canola | nucleus | 52.54 | 52.8 |
| CDY42156 | Canola | nucleus | 52.7 | 52.53 |
| CDY08423 | Canola | nucleus | 52.37 | 51.7 |
| CDY30842 | Canola | nucleus | 20.46 | 44.33 |
| KRG97906 | Soybean | nucleus | 44.19 | 40.06 |
| KRH30983 | Soybean | nucleus | 44.52 | 40.06 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.5 | 39.49 |
| PGSC0003DMT400060234 | Potato | nucleus | 44.03 | 39.04 |
| Solyc05g054410.2.1 | Tomato | nucleus | 43.86 | 38.9 |
| CDY06712 | Canola | nucleus | 37.64 | 38.59 |
| CDY10282 | Canola | nucleus | 36.82 | 37.5 |
| CDY15617 | Canola | nucleus | 35.84 | 37.12 |
| Solyc04g011650.2.1 | Tomato | nucleus | 38.95 | 35.68 |
| PGSC0003DMT400016260 | Potato | nucleus | 38.95 | 35.52 |
| CDX86474 | Canola | nucleus | 30.44 | 33.39 |
| CDX80268 | Canola | nucleus | 34.21 | 25.24 |
| CDY33039 | Canola | nucleus | 33.88 | 25.03 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078CNY9 | EnsemblPlants:CDX78540 | ProteinID:CDX78540 | ProteinID:CDX78540.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00129944001 |
| InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFscan:PS50053 | PFscan:PS51294 |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1EDE |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
BnaA03g04520D
Coordinates
chrLK031815:+:1225227..1228348
Molecular Weight (calculated)
67804.1 Da
IEP (calculated)
7.666
GRAVY (calculated)
-0.640
Length
611 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKRRLNCG FDFSGVPKAP RSTRRKVSSE RDDVDSQLTA FDLLASLAGK LLEESESSST STYGDSQEDH LVVKIKQEHE LVYNDKPCKS ELSHQGNLSS
101: KSPSDNTSET CLQVSSLEND CVLEQTPVSD CKMALGLKQP LLGCGNKKED CAVLVEQGEA TNGLEDGGLI ADTFSLKGPS HESVHLDGVP NGSLEGYRNH
201: SKLACRDDDD ENYCTYYKFG DKCNKSYRPM TRVGYRRIKK SMMTKHGRAV SRSKCFEDTR TDGCLKSLYR KRKLCYGYNP WKHETVHRKR RLSDKGLVVT
301: SDGGLSSESV TNSPQKGESV KLSIKSFRIP ELFIEVPETA TVGSLKRTVM EAVTALLGDG IRIGVLVQGK KVRDDTNTLS QTGLSCRENL DNLGFTLEPG
401: SSENPVLSLP TDSTNLSERS SASPELNSRI PLSLLHADHM INSGTCVESK QELVPYQSDI TADEQQQPSP DSRAIVPVPP LEPEALAIVP LNEKPKRTEL
501: SQRRTRRPFS VSEVEALVHA VEELGTGRWR DVKLRSFDDA SHRTYVDLKD KWKTLVHTAS ISPQQRRGQP VPQELLDRVL AAHRYWSQHQ VKQNGKHQAA
601: AMMVVESGLS M
101: KSPSDNTSET CLQVSSLEND CVLEQTPVSD CKMALGLKQP LLGCGNKKED CAVLVEQGEA TNGLEDGGLI ADTFSLKGPS HESVHLDGVP NGSLEGYRNH
201: SKLACRDDDD ENYCTYYKFG DKCNKSYRPM TRVGYRRIKK SMMTKHGRAV SRSKCFEDTR TDGCLKSLYR KRKLCYGYNP WKHETVHRKR RLSDKGLVVT
301: SDGGLSSESV TNSPQKGESV KLSIKSFRIP ELFIEVPETA TVGSLKRTVM EAVTALLGDG IRIGVLVQGK KVRDDTNTLS QTGLSCRENL DNLGFTLEPG
401: SSENPVLSLP TDSTNLSERS SASPELNSRI PLSLLHADHM INSGTCVESK QELVPYQSDI TADEQQQPSP DSRAIVPVPP LEPEALAIVP LNEKPKRTEL
501: SQRRTRRPFS VSEVEALVHA VEELGTGRWR DVKLRSFDDA SHRTYVDLKD KWKTLVHTAS ISPQQRRGQP VPQELLDRVL AAHRYWSQHQ VKQNGKHQAA
601: AMMVVESGLS M
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.