CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80268	Canola	nucleus	97.94	97.83
Bra002566.1-P	Field mustard	nucleus	66.38	96.49
AT5G59430.2	Thale cress	nucleus	50.06	71.63
CDY30842	Canola	nucleus	14.39	42.2
CDY06712	Canola	nucleus	26.24	36.41
CDY10282	Canola	nucleus	25.51	35.17
GSMUA_Achr8P20810_001	Banana	nucleus	27.21	34.56
CDY42156	Canola	nucleus	25.51	34.42
CDY08423	Canola	nucleus	25.76	34.41
CDY68172	Canola	nucleus	23.46	34.4
CDX85624	Canola	mitochondrion	22.49	34.13
CDX91094	Canola	nucleus	22.97	34.11
CDY50529	Canola	nucleus	25.03	34.1
CDX78540	Canola	nucleus	25.03	33.88
CDX70522	Canola	nucleus	23.58	33.74
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	26.24	33.64
CDY15617	Canola	nucleus	23.82	33.39
CDY50353	Canola	nucleus	24.43	33.22
GSMUA_Achr10P...	Banana	cytosol, plastid	3.63	32.61
CDX69626	Canola	nucleus	23.34	32.55
GSMUA_Achr7P15090_001	Banana	nucleus	27.09	32.32
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	27.45	31.88
Os03t0274300-01	Rice	nucleus	25.39	30.35
KXG39691	Sorghum	nucleus, plastid	25.63	30.03
CDX86474	Canola	nucleus	20.07	29.8
TraesCS4D01G208600.1	Wheat	nucleus	24.3	29.09
TraesCS4A01G096700.1	Wheat	nucleus	24.3	29.09
TraesCS3D01G533700.1	Wheat	nucleus, plastid	22.73	28.92
TraesCS4B01G207700.1	Wheat	nucleus	24.18	28.9
HORVU3Hr1G115540.2	Barley	nucleus, plastid	22.85	28.72
HORVU4Hr1G059800.2	Barley	nucleus	23.94	28.65
TraesCS3A01G528500.1	Wheat	nucleus, plastid	22.49	28.57
TraesCS3B01G597500.1	Wheat	nucleus, plastid	22.49	28.57
EES10985	Sorghum	mitochondrion	22.13	28.15
Zm00001d047808_P001	Maize	nucleus, plastid	24.55	27.18
Zm00001d028608_P006	Maize	nucleus	21.77	25.86
TraesCS6A01G392300.1	Wheat	nucleus	19.95	24.59
TraesCS6B01G432500.1	Wheat	nucleus	19.95	24.59
TraesCS6D01G378100.1	Wheat	nucleus	19.95	24.59
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	18.38	19.56
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	21.28	19.4
Os02t0817800-03	Rice	nucleus	8.95	11.69

Protein Annotations

KEGG:00240+2.7.4.9	Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	Gene3D:3.40.50.300	MapMan:6.3.2.3
GO:A0A078H6B8	UniProt:A0A078H6B8	EnsemblPlants:CDY33039	ProteinID:CDY33039	ProteinID:CDY33039.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004798	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006139	GO:GO:0006233	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0046939	GO:GO:0046940
EnsemblPlantsGene:GSBRNA2T00053274001	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	HAMAP:MF_00165	InterPro:Myb_dom
InterPro:P-loop_NTPase	PFAM:PF02223	ScanProsite:PS01331	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717
PANTHER:PTHR21717:SF38	MetaCyc:PWY-6545	MetaCyc:PWY-7184	MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198
MetaCyc:PWY-7210	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF52540	SUPFAM:SSF54236
TIGRFAMs:TIGR00041	InterPro:Thymidylate_kin_CS	InterPro:Thymidylate_kinase	UniParc:UPI0004EE4E57	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

BnaA10g12450DBnaA10g12450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6B8]

Coordinates

chrLK032304:+:393894..398834

Molecular Weight (calculated)

92377.3 Da

IEP (calculated)

8.880

GRAVY (calculated)

-0.583

Length

827 amino acids

Sequence
(BLAST)

001: MVSHKCVEEF SLQFPANARA PRSARKKRSF KKEEITENDK TCAIDLLATV AENLLSETGS SHMSIDKPVE DHCLVKEEFP VEDKPLKPAT LPEFNPYQGS
101: SMSPCGFSSV INGKVEIEAE GFSHSGGIDS CQAGQDLKPS VDGGAVVLDA RPNGVGSLGG SSSRTKVPSM GAGVSLGALD DVHMFSRDDD ENFSGYICPR
201: VTKKSPRSVP RVGDRRIRKI LASRHWKGGS RHSEAKSWRN YYLHHQRSYP IKKRKYFEHI SDSVSDDYRL RSKMQRGSRA VSTMKGPGAS FVSSDSHVRL
301: RIKSFRVPEL FVEIPETATV GSLKRMVMEA VSTLLSDGHR VGLMVQGKKV RDDNKTLHQT GISQDNTHLD SLDFSLEPSS EAPHLLSSNP SGHVCEELPM
401: CHASDMDTLF KSEPDLALFP SGSFDKETAA DDSKALVHAA LTELSPHQPP RHKSNKQQQQ QQTAQRRMRR PFSVTEVEAL VQAVEKLGTG RWRDVKHSAF
501: EDADHRTYVD LKDKWKTLVH TAKISPQQRR GEPVPQELLN RVLNAHGYWS QQHMETLALP KPDYNPATFH TTWTNLLLMF RTSIGSSFRA LALPPRSFNY
601: LSRSSVRMEN LTFSSEAGAK PRGALIVVEG LDRSGKSTQC VKLRSFLESS GHPTELWRFP DRETSVGQMI SAYLSNKSQL DDRTIHLLFS ANRWEKRSLM
701: EEKLKGGTTL IVDRYSYSGV AFSSAKGLGI EWCKAPEVGL LAPDSVLYLD ISPERAAERG GYGDERYERV DFQRKVSEFY QTLRDSSWKI IDAGGTMEEV
801: EKKIQQVVLD KVKECAQGKS LSLLWSS

Best Arabidopsis Sequence Match ( AT5G59430.3 )
(BLAST)

001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQHLGGRL SFVYYYYY

Arabidopsis Description

TRP1Telomere repeat-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.