Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G53790.1 | Thale cress | nucleus | 53.55 | 37.75 |
| CDY06712 | Canola | nucleus | 48.94 | 23.15 |
| CDY10282 | Canola | nucleus | 48.23 | 22.67 |
| CDX85624 | Canola | mitochondrion | 42.91 | 22.2 |
| CDY15617 | Canola | nucleus | 45.74 | 21.86 |
| CDY68172 | Canola | nucleus | 43.26 | 21.63 |
| CDX91094 | Canola | nucleus | 42.55 | 21.54 |
| CDX70522 | Canola | nucleus | 43.62 | 21.28 |
| CDX69626 | Canola | nucleus | 44.33 | 21.08 |
| CDX78540 | Canola | nucleus | 44.33 | 20.46 |
| CDY50529 | Canola | nucleus | 42.91 | 19.93 |
| CDY50353 | Canola | nucleus | 42.91 | 19.9 |
| CDY42156 | Canola | nucleus | 42.91 | 19.74 |
| CDY08423 | Canola | nucleus | 41.84 | 19.06 |
| CDX86474 | Canola | nucleus | 36.88 | 18.67 |
| CDY33039 | Canola | nucleus | 42.2 | 14.39 |
| CDX80268 | Canola | nucleus | 41.84 | 14.25 |
Protein Annotations
| EnsemblPlants:CDY30842 | EnsemblPlantsGene:GSBRNA2T00046310001 | Gene3D:1.10.246.220 | GO:A0A078H028 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF38 | PFscan:PS51294 | ProteinID:CDY30842 | ProteinID:CDY30842.1 | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0004EB72A8 | UniProt:A0A078H028 | MapMan:15.5.2.2 | : | : |
Description
BnaC04g26970DBnaC04g26970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H028]
Coordinates
chrLK032262:-:60447..61967
Molecular Weight (calculated)
32159.1 Da
IEP (calculated)
10.919
GRAVY (calculated)
-0.438
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEVKPQPC REKPSQVILS KDWFSSWSFH HTRRKTPILT GKERFVPRKR EVVLAKNRKI FKFVIESLKI SELLMDIPES ATVGSLKVAV LEAVTRILKD
101: GLNIGVLVRG ETIVDDSKTL LQIGISRDVD GNNHNLSSLG FTLEPQISET TATVLESMES NKTRPAKSVV QVLMKPPTQQ EMVHRRIRRP FTVSEVQVLV
201: QAVESLGTGR WRDVKSHAFD HANHQTYVDV KDKWKTLVHT AKISARQRRG EPVPQELLDR VLAVHALWSP MNRNSRRQKR SL
101: GLNIGVLVRG ETIVDDSKTL LQIGISRDVD GNNHNLSSLG FTLEPQISET TATVLESMES NKTRPAKSVV QVLMKPPTQQ EMVHRRIRRP FTVSEVQVLV
201: QAVESLGTGR WRDVKSHAFD HANHQTYVDV KDKWKTLVHT AKISARQRRG EPVPQELLDR VLAVHALWSP MNRNSRRQKR SL
001: MVDCGVDIYQ LPVVPRACRS PRGRRLKIMR KQRSEFEVLA QVAGRFSGER KNRIVIGSLA HETKETKDDN VVVNNFLETM EVEVKPQPGL ENLSQVLLSK
101: DWLALGPSMP NSPITQEENF DSRSKIDSKR KVSHLKERGS CISQESQNMY PLKKRKLFYQ NHSSESHDTP CTVKFGIKSL NISELLVDVP ESATVGSLKL
201: AVLEAVTQIL KGGLNIGVLF QGKTIVDDSK TLLQIGIPYD DDDDENLGSL GFMLEPQKSE TTTITTLTTV SPRTRLRQNQ VLGSVDSTEA VAAKSVVPVR
301: MKPAWQPEMV QRRIRRPFTV SEVEALVQAV ERLGTGRWRD VKSHAFNHVN HRTYVDLKDK WKTLVHTAKI SARQRRGEPV PQDLLDRVLA AHAFWSDRTG
101: DWLALGPSMP NSPITQEENF DSRSKIDSKR KVSHLKERGS CISQESQNMY PLKKRKLFYQ NHSSESHDTP CTVKFGIKSL NISELLVDVP ESATVGSLKL
201: AVLEAVTQIL KGGLNIGVLF QGKTIVDDSK TLLQIGIPYD DDDDENLGSL GFMLEPQKSE TTTITTLTTV SPRTRLRQNQ VLGSVDSTEA VAAKSVVPVR
301: MKPAWQPEMV QRRIRRPFTV SEVEALVQAV ERLGTGRWRD VKSHAFNHVN HRTYVDLKDK WKTLVHTAKI SARQRRGEPV PQDLLDRVLA AHAFWSDRTG
Arabidopsis Description
TRFL4TRF-like 4 [Source:TAIR;Acc:AT3G53790]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.