Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023437.1-P | Field mustard | nucleus | 93.21 | 88.81 |
| CDX91094 | Canola | nucleus | 87.34 | 85.46 |
| CDX78540 | Canola | nucleus | 63.3 | 56.46 |
| CDX70522 | Canola | nucleus | 58.9 | 55.54 |
| CDY68172 | Canola | nucleus | 57.25 | 55.32 |
| AT5G13820.1 | Thale cress | nucleus | 64.77 | 55.16 |
| CDX69626 | Canola | nucleus | 58.72 | 53.96 |
| CDY50353 | Canola | nucleus | 54.68 | 49.01 |
| CDY50529 | Canola | nucleus | 54.31 | 48.76 |
| CDY42156 | Canola | nucleus | 52.48 | 46.66 |
| CDY08423 | Canola | nucleus | 52.84 | 46.53 |
| CDY30842 | Canola | nucleus | 22.2 | 42.91 |
| KRH30983 | Soybean | nucleus | 46.97 | 37.7 |
| KRG97906 | Soybean | nucleus | 46.05 | 37.24 |
| Solyc05g054410.2.1 | Tomato | nucleus | 46.05 | 36.43 |
| PGSC0003DMT400060234 | Potato | nucleus | 45.69 | 36.14 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.69 | 35.37 |
| CDY10282 | Canola | nucleus | 37.25 | 33.83 |
| CDY06712 | Canola | nucleus | 36.88 | 33.72 |
| PGSC0003DMT400016260 | Potato | nucleus | 41.28 | 33.58 |
| Solyc04g011650.2.1 | Tomato | nucleus | 40.73 | 33.28 |
| CDY15617 | Canola | nucleus | 35.78 | 33.05 |
| CDX86474 | Canola | nucleus | 30.46 | 29.8 |
| CDX80268 | Canola | nucleus | 34.5 | 22.71 |
| CDY33039 | Canola | nucleus | 34.13 | 22.49 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078DBE2 | EnsemblPlants:CDX85624 | ProteinID:CDX85624 | ProteinID:CDX85624.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00143352001 |
| InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFscan:PS50053 | PFscan:PS51294 |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE0BD8 |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
BnaA02g01890D
Coordinates
chrLK031842:-:908013..911087
Molecular Weight (calculated)
60792.7 Da
IEP (calculated)
7.646
GRAVY (calculated)
-0.639
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIKRRFSHV FDFSSIPKAP RSTRRKVLSS KNDGVDDIRT TAIDLLASLA GKLLEESESS STSSTNAFVE GKGNIIKQED VEDDDVKPCE SELASKSPPS
101: DITSETSLEK TRVSDCERGL GLKPCGNKKE DCDDITEETG VDIEKREVKT PPGTDGVLNQ SKLVCRDDDD ENYCKYYRFS DRCRRFNRPL TRVGHRRIVT
201: KYGRAVPRDT RTDGCLLYRK RKLCNGYNPW MHETVQRKRR LSDGGLSSES VTNSPEKKGS VKFSIKSFRI PELFIEVPDT ATVGSLKRTV MEAVAALLGD
301: GIRIGVLVQG KKIRDDSNTL SQTGLSCREN LSNLGFTLEP GHVPLCSESH VISTPTDSTN LSERSLDSRI PFHLQDADHV ISSENCVENN QELVPYQSDI
401: SADEPSSDSR ALVLVSALEP EALAIVPLNE KSKRTELSQR RTRRPFSVTE VEALVAAVEE LGTGRWRDVK LRSFDDASHR TYVDLKDKWK TLVHTASISP
501: QQRRGEPVPQ ELLDRVLAAH RCWSQHQLKQ NGKLQAAATM VGSSM
101: DITSETSLEK TRVSDCERGL GLKPCGNKKE DCDDITEETG VDIEKREVKT PPGTDGVLNQ SKLVCRDDDD ENYCKYYRFS DRCRRFNRPL TRVGHRRIVT
201: KYGRAVPRDT RTDGCLLYRK RKLCNGYNPW MHETVQRKRR LSDGGLSSES VTNSPEKKGS VKFSIKSFRI PELFIEVPDT ATVGSLKRTV MEAVAALLGD
301: GIRIGVLVQG KKIRDDSNTL SQTGLSCREN LSNLGFTLEP GHVPLCSESH VISTPTDSTN LSERSLDSRI PFHLQDADHV ISSENCVENN QELVPYQSDI
401: SADEPSSDSR ALVLVSALEP EALAIVPLNE KSKRTELSQR RTRRPFSVTE VEALVAAVEE LGTGRWRDVK LRSFDDASHR TYVDLKDKWK TLVHTASISP
501: QQRRGEPVPQ ELLDRVLAAH RCWSQHQLKQ NGKLQAAATM VGSSM
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.