Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra040510.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | Bra040510.1-P | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85624 | Canola | mitochondrion | 88.81 | 93.21 |
| Bra006218.1-P | Field mustard | mitochondrion | 59.79 | 55.88 |
| AT5G13820.1 | Thale cress | nucleus | 61.01 | 54.53 |
| Bra008800.1-P | Field mustard | nucleus | 54.37 | 52.45 |
| Bra034751.1-P | Field mustard | nucleus | 51.22 | 48.27 |
| Bra038729.1-P | Field mustard | nucleus | 50.7 | 47.54 |
| KRH30983 | Soybean | nucleus | 44.41 | 37.41 |
| KRG97906 | Soybean | nucleus | 43.88 | 37.24 |
| Solyc05g054410.2.1 | Tomato | nucleus | 44.23 | 36.72 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.88 | 36.43 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 43.18 | 35.09 |
| PGSC0003DMT400016260 | Potato | nucleus | 40.91 | 34.93 |
| Solyc04g011650.2.1 | Tomato | nucleus | 40.21 | 34.48 |
| Bra015585.1-P | Field mustard | nucleus | 35.49 | 33.95 |
| Bra030689.1-P | Field mustard | nucleus | 35.84 | 33.77 |
| Bra002566.1-P | Field mustard | nucleus | 32.87 | 33.04 |
Protein Annotations
| EnsemblPlants:Bra023437.1 | EnsemblPlants:Bra023437.1-P | EnsemblPlantsGene:Bra023437 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI0002543500 | UniProt:M4E3T4 | MapMan:15.5.2.2 | : | : | : |
Description
AT5G13820 (E=1e-131) TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | TBP1 (TELOMERIC DNA BINDING PROTEIN 1); DNA binding / double-stranded telomeric DNA binding
Coordinates
chrA02:+:3374920..3377131
Molecular Weight (calculated)
63900.4 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.601
Length
572 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIKRRFNHV FDFSTIPKAP RSTRRKLLSS KNDGVDDIRT TAFDLLASLA GKLLEESESS STSSTNAFVK GKGNNVKQED VEDDDVKPCE SELASKSPPS
101: DITSETPLEQ TRVSDCERGL GLKPCGNKKE DCDDITEETC VDIEKREVKT PPGTDGVLNQ SKLVCRDDDD ENYCKYYRFS DRCRRFNRPL TRVGHRRMMT
201: KYGRAVPRDT RTGYYHVLFD ASFVASALFL NSTCGYMCLD GCLLYRKRKL CNGYNPWRHE TVHRKRRLSD GGLSSESVTN SPQKGESVKF SIKSFRIPEL
301: FIEVPDTATV GSLKRTVMEA VAALLGDGIR IGVLVQGKKV RDDSNTLSQT GLSCRENLSN LGFTLEPGHI PLCSESPVIS TPTDCTNLSE RSLDSRIPFH
401: LQDADHVISS KNCVENNQEL VPYQSDISAD EPSSDSRALV PVSSLEPDAL AIVPLNEKSK RTEVSQRRTR RPFSVAEVEA LVAAVEELGT GRWRDVKLRS
501: FDDASHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAHRCW SQHQLKQNGK LQAAATMVGS SM
101: DITSETPLEQ TRVSDCERGL GLKPCGNKKE DCDDITEETC VDIEKREVKT PPGTDGVLNQ SKLVCRDDDD ENYCKYYRFS DRCRRFNRPL TRVGHRRMMT
201: KYGRAVPRDT RTGYYHVLFD ASFVASALFL NSTCGYMCLD GCLLYRKRKL CNGYNPWRHE TVHRKRRLSD GGLSSESVTN SPQKGESVKF SIKSFRIPEL
301: FIEVPDTATV GSLKRTVMEA VAALLGDGIR IGVLVQGKKV RDDSNTLSQT GLSCRENLSN LGFTLEPGHI PLCSESPVIS TPTDCTNLSE RSLDSRIPFH
401: LQDADHVISS KNCVENNQEL VPYQSDISAD EPSSDSRALV PVSSLEPDAL AIVPLNEKSK RTEVSQRRTR RPFSVAEVEA LVAAVEELGT GRWRDVKLRS
501: FDDASHRTYV DLKDKWKTLV HTASISPQQR RGEPVPQELL DRVLAAHRCW SQHQLKQNGK LQAAATMVGS SM
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.