Factsheet for Bra030689.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15617	Canola	nucleus	95.55	98.31
Bra015585.1-P	Field mustard	nucleus	74.14	75.25
AT1G07540.1	Thale cress	nucleus	71.99	69.37
GSMUA_Achr8P20810_001	Banana	nucleus	40.2	37.48
GSMUA_Achr10P...	Banana	cytosol, plastid	5.6	36.96
Bra002566.1-P	Field mustard	nucleus	34.27	36.56
Bra006218.1-P	Field mustard	mitochondrion	36.41	36.11
Bra038729.1-P	Field mustard	nucleus	36.24	36.07
Bra023437.1-P	Field mustard	nucleus	33.77	35.84
Bra034751.1-P	Field mustard	nucleus	35.42	35.42
GSMUA_Achr7P15090_001	Banana	nucleus	40.36	35.35
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.07	34.88
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	40.86	34.83
Bra008800.1-P	Field mustard	nucleus	32.78	33.56
Os03t0274300-01	Rice	nucleus	38.06	33.38
KXG39691	Sorghum	nucleus, plastid	38.55	33.14
HORVU4Hr1G059800.2	Barley	nucleus	36.74	32.27
TraesCS4B01G207700.1	Wheat	nucleus	36.74	32.23
TraesCS4A01G096700.1	Wheat	nucleus	36.57	32.13
TraesCS4D01G208600.1	Wheat	nucleus	36.57	32.13
TraesCS3D01G533700.1	Wheat	nucleus, plastid	32.62	30.46
TraesCS3A01G528500.1	Wheat	nucleus, plastid	32.29	30.11
TraesCS3B01G597500.1	Wheat	nucleus, plastid	32.29	30.11
HORVU3Hr1G115540.2	Barley	nucleus, plastid	32.45	29.94
Zm00001d047808_P001	Maize	nucleus, plastid	36.41	29.59
EES10985	Sorghum	mitochondrion	31.47	29.38
Zm00001d028608_P006	Maize	nucleus	33.44	29.17
TraesCS6D01G378100.1	Wheat	nucleus	26.52	23.99
TraesCS6A01G392300.1	Wheat	nucleus	26.36	23.84
TraesCS6B01G432500.1	Wheat	nucleus	26.36	23.84
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.23	18.15
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.03	17.42
Os02t0817800-03	Rice	nucleus	11.37	10.9

Protein Annotations

EnsemblPlants:Bra030689.1	EnsemblPlants:Bra030689.1-P	EnsemblPlantsGene:Bra030689	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002546D65	UniProt:M4EPG9	MapMan:15.5.2.2	:	:	:

Description

AT1G07540 (E=9e-190) TRFL2 | TRFL2 (TRF-LIKE 2); DNA binding

Coordinates

chrA08:+:20794217..20796769

Molecular Weight (calculated)

67785.3 Da

IEP (calculated)

9.808

GRAVY (calculated)

-0.742

Length

607 amino acids

Sequence
(BLAST)

001: MVLQTRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV AGKLLLESGG VSSSSSNNAS GDNNEDQCGG KKESGDQMVV GETHCDHHHD
101: NNAERSFFVS EILPKAHEME SFNRSPNPNK DFLFGSTSGI TYEYSSEKLG TQELAYEEAK IHNGDCFRSD SNGKKPMLER LNCEPELSRN KDKHHIDNSL
201: NGMENNDGEN FSARYATKSF RSTLRVGDGR VKKVMSSKYC KVSSNQKDTM VAGSDLDLKP GYYSKKHCFK SLRSEKKYPI KKRRYFDGYT ASQSEETVRN
301: EGLSGSPRKA FLSTIACQKQ PALQSRDSHV KLGIKSFRVP ELSIEVPETA TIGSLKRTVL EAVTTILEGG LRIGVLVHGK KVRDDNKMLL QTGISLDTLS
401: DTLSFCLETN PPQSTKPLSP KDSDYMRPCY VPHTITRCLP SLGKHAKPSD SVESDLDSKP SSPFRAKPVY SRALIPVSPP LHAQALNVVP PRKPKRSEVA
501: QRRIRRPFSV AEVEALVQAV ERLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLM AHAYWSQQQG KQQLLEGPQN
601: LETSLGL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.