Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra040510.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | Bra040510.1-P | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69626 | Canola | nucleus | 99.49 | 99.49 |
| AT5G13820.1 | Thale cress | nucleus | 61.72 | 57.19 |
| Bra006218.1-P | Field mustard | mitochondrion | 58.35 | 56.54 |
| Bra023437.1-P | Field mustard | nucleus | 52.45 | 54.37 |
| Bra038729.1-P | Field mustard | nucleus | 48.06 | 46.72 |
| Bra034751.1-P | Field mustard | nucleus | 47.55 | 46.46 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 43.17 | 36.36 |
| KRH30983 | Soybean | nucleus | 41.48 | 36.23 |
| KRG97906 | Soybean | nucleus | 40.98 | 36.05 |
| PGSC0003DMT400060234 | Potato | nucleus | 41.15 | 35.41 |
| Solyc05g054410.2.1 | Tomato | nucleus | 40.81 | 35.12 |
| Bra002566.1-P | Field mustard | nucleus | 33.05 | 34.45 |
| Bra015585.1-P | Field mustard | nucleus | 33.9 | 33.61 |
| PGSC0003DMT400016260 | Potato | nucleus | 37.27 | 32.99 |
| Bra030689.1-P | Field mustard | nucleus | 33.56 | 32.78 |
| Solyc04g011650.2.1 | Tomato | nucleus | 36.26 | 32.23 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EnsemblPlantsGene:Bra008800 | EnsemblPlants:Bra008800.1 | EnsemblPlants:Bra008800.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR013087 | InterPro:IPR017930 |
| UniProt:M4CX53 | InterPro:Myb_dom | ScanProsite:PS00028 | PFscan:PS50157 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000254377A | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
AT3G12560 (E=2e-126) TRFL9, ATTBP2 | TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding
Coordinates
chrA10:-:13880575..13883054
Molecular Weight (calculated)
65987.5 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.732
Length
593 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKRMLYSD FDFSSFPKAP RSIRRKVSSS QRRDDVDCGM MRAIDLLAYV AEKLQEEEGE TSSNSINAFE EGYYNQNRLA GKIKQEHQAN LASSKSPSEN
101: ASGVSLEQTQ VSDCKRGRGL NPLAGCGNKK EDCDFHVESG GVTVETCVVN NVDAGLEDGG LISLKDPSQL HVQCPEPVHL DGVPNEYRNR SKLVCRDDDE
201: SYCEYYKCKD KCNKSYSPSL TWAGHRRAVH RSKCFEGTKT DGSVKALDRK RKLCCRYSPR KHETLHKKRR LSDKGLVVNS DGGITSESGT NSTEKRESEN
301: GVLSDAIGLH SEDSRVKFSI KSLRIPELFI EVPETATVGS LKRTVMEAVS ALLDDGISIG VTVQGRKVRD DNNTLSQTGL SCRENLGNLG FTLEPGPEKL
401: SVPLCSENPV MSKPTDSTKL SERSAANCVE NNSQELVPYQ MDISADEQQP SSDSRAMVSV SALEPEALAI VPFKEKPKRT ELSQRRIRRP FSVTEVEALV
501: NAVEELGTGR WRDVKLRSFE NESHRTYVDL KDKWKTLVHT ASISPQQRRG EPVPQELLDR VLASHRYWSQ HPPKQNGKHQ DAATMVTESG PSM
101: ASGVSLEQTQ VSDCKRGRGL NPLAGCGNKK EDCDFHVESG GVTVETCVVN NVDAGLEDGG LISLKDPSQL HVQCPEPVHL DGVPNEYRNR SKLVCRDDDE
201: SYCEYYKCKD KCNKSYSPSL TWAGHRRAVH RSKCFEGTKT DGSVKALDRK RKLCCRYSPR KHETLHKKRR LSDKGLVVNS DGGITSESGT NSTEKRESEN
301: GVLSDAIGLH SEDSRVKFSI KSLRIPELFI EVPETATVGS LKRTVMEAVS ALLDDGISIG VTVQGRKVRD DNNTLSQTGL SCRENLGNLG FTLEPGPEKL
401: SVPLCSENPV MSKPTDSTKL SERSAANCVE NNSQELVPYQ MDISADEQQP SSDSRAMVSV SALEPEALAI VPFKEKPKRT ELSQRRIRRP FSVTEVEALV
501: NAVEELGTGR WRDVKLRSFE NESHRTYVDL KDKWKTLVHT ASISPQQRRG EPVPQELLDR VLASHRYWSQ HPPKQNGKHQ DAATMVTESG PSM
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.