Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42156 | Canola | nucleus | 86.16 | 85.32 |
| CDY08423 | Canola | nucleus | 86.82 | 85.14 |
| AT3G12560.2 | Thale cress | nucleus | 73.81 | 72.37 |
| Bra038729.1-P | Field mustard | nucleus | 71.5 | 71.15 |
| Bra006218.1-P | Field mustard | mitochondrion | 52.55 | 52.12 |
| Bra023437.1-P | Field mustard | nucleus | 48.27 | 51.22 |
| Bra008800.1-P | Field mustard | nucleus | 46.46 | 47.55 |
| KRG97906 | Soybean | nucleus | 45.8 | 41.25 |
| KRH30983 | Soybean | nucleus | 45.3 | 40.5 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.3 | 39.06 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.66 | 38.46 |
| Solyc05g054410.2.1 | Tomato | nucleus | 43.0 | 37.88 |
| Bra015585.1-P | Field mustard | nucleus | 36.08 | 36.62 |
| Bra002566.1-P | Field mustard | nucleus | 33.61 | 35.85 |
| Bra030689.1-P | Field mustard | nucleus | 35.42 | 35.42 |
| PGSC0003DMT400016260 | Potato | nucleus | 38.55 | 34.93 |
| Solyc04g011650.2.1 | Tomato | nucleus | 38.06 | 34.63 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EnsemblPlantsGene:Bra034751 | EnsemblPlants:Bra034751.1 | EnsemblPlants:Bra034751.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Homeobox-like_sf | InterPro:IPR000626 |
| InterPro:IPR017930 | UniProt:M4F106 | InterPro:Myb_dom | PFscan:PS50053 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | UniParc:UPI000254738C |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
AT3G12560 (E=1e-192) TRFL9, ATTBP2 | TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding
Coordinates
chrA05:+:21270037..21272473
Molecular Weight (calculated)
67051.2 Da
IEP (calculated)
8.285
GRAVY (calculated)
-0.621
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLDCV SVAFDYPNIP KAPRSCRRKV LNKSTDDDDD AKMCAMDLLA SLAGKILEEG QSSSASSNAF EGNAQEIKQE DHHKPVKSEF SDQGNSVSMP
101: TYENTSDKCV VNSFSFPDND GILERTPMSD HKKIHGETGG NVNVNTGFEQ GEAIDGMGDG GLTTNTCNLE DKTALVVQLP KPVCVDMIPN DSLARHGNHT
201: NLVRDDDEKL YSSRKCSNKF TSYKSPAIRR IRKSKYWKQV SKDCGHYKAD VGIKALYRKR KSCYGYNTWK HETIYKRRRS PDRSSVVTSD GGLCNGSVSK
301: LPQKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKV RDDKRTLSQT GISSEENLSN LGFTLEPGGT SKVPLPLCSE
401: DPVVPTTEPT SLCERSAAAS PTLDSGVPHA DDVINSGNVV DNNLELVPYQ SEISVDEPSS DSRALVPLPA LEEVKALAIV PLNQKPKRTE LAQRRARRPF
501: SVTEVEALVQ AVEELGTGRW RDVKLRAFEN ADHRTYVDLK DKWKTLVHTA SISPQQRRGE PVPQELLDRV LKAYGYWSQH QGEHQARGAP KDPDMNRGRA
601: LDSVVSV
101: TYENTSDKCV VNSFSFPDND GILERTPMSD HKKIHGETGG NVNVNTGFEQ GEAIDGMGDG GLTTNTCNLE DKTALVVQLP KPVCVDMIPN DSLARHGNHT
201: NLVRDDDEKL YSSRKCSNKF TSYKSPAIRR IRKSKYWKQV SKDCGHYKAD VGIKALYRKR KSCYGYNTWK HETIYKRRRS PDRSSVVTSD GGLCNGSVSK
301: LPQKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKV RDDKRTLSQT GISSEENLSN LGFTLEPGGT SKVPLPLCSE
401: DPVVPTTEPT SLCERSAAAS PTLDSGVPHA DDVINSGNVV DNNLELVPYQ SEISVDEPSS DSRALVPLPA LEEVKALAIV PLNQKPKRTE LAQRRARRPF
501: SVTEVEALVQ AVEELGTGRW RDVKLRAFEN ADHRTYVDLK DKWKTLVHTA SISPQQRRGE PVPQELLDRV LKAYGYWSQH QGEHQARGAP KDPDMNRGRA
601: LDSVVSV
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.