Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50529 | Canola | nucleus | 96.56 | 97.03 |
| AT3G12560.2 | Thale cress | nucleus | 72.79 | 71.73 |
| Bra034751.1-P | Field mustard | nucleus | 71.15 | 71.5 |
| Bra006218.1-P | Field mustard | mitochondrion | 52.62 | 52.45 |
| Bra023437.1-P | Field mustard | nucleus | 47.54 | 50.7 |
| Bra008800.1-P | Field mustard | nucleus | 46.72 | 48.06 |
| KRG97906 | Soybean | nucleus | 46.39 | 41.99 |
| KRH30983 | Soybean | nucleus | 46.23 | 41.53 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.57 | 39.49 |
| PGSC0003DMT400060234 | Potato | nucleus | 42.95 | 38.03 |
| Bra015585.1-P | Field mustard | nucleus | 36.89 | 37.63 |
| Solyc05g054410.2.1 | Tomato | nucleus | 42.3 | 37.45 |
| Bra002566.1-P | Field mustard | nucleus | 34.92 | 37.43 |
| Bra030689.1-P | Field mustard | nucleus | 36.07 | 36.24 |
| PGSC0003DMT400016260 | Potato | nucleus | 39.67 | 36.12 |
| Solyc04g011650.2.1 | Tomato | nucleus | 39.18 | 35.83 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EnsemblPlantsGene:Bra038729 | EnsemblPlants:Bra038729.1 | EnsemblPlants:Bra038729.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | InterPro:Homeobox-like_sf | InterPro:IPR000626 |
| InterPro:IPR017930 | UniProt:M4FCB3 | InterPro:Myb_dom | PFscan:PS50053 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | UniParc:UPI0002545235 |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
AT3G12560 (E=4e-222) TRFL9, ATTBP2 | TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding
Coordinates
chrA01:+:26403556..26406345
Molecular Weight (calculated)
67743.9 Da
IEP (calculated)
8.632
GRAVY (calculated)
-0.674
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLECV SVGFDYPNIP KAPRSCRRKV VNKRTDAMDL LASLAGKLLE ECESSSASSN AFEVNTHENC RKEIKQEDHL KSESSDQGNS VSRPTYEKTC
101: VVNSFSFPDD GILERTPVCE TKNVKSEGVT EERGDVIVNT GFEQDGGLGA DAFNLEDATA LGVQFPKSVC VDGDVKSPSC LNKTSNGSLD RQGNHTKLGR
201: DDDDEKLYSY HKFSSKFKSY RSPTIRRIRK SLSSKYWKQM AKDFGHYRAD AGVKALYRKR KSCYGYNAWQ RETIYKRRRS PDRSSVVTSD GGLSSGSVSK
301: LPEKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKV RDDKKTLSQS GISSEENLTN LGFTLEPGPS KAPVPLCSQD
401: PLVSLPIDPT NLSERSAVSP TLDTETPHPD DVANPGNIVD NNHLELIPYQ KEITVDEEEP STDPKALVPL PALEAEALAI VPLNQKPKRT ELAQRRTRRP
501: FSVTEVEALV QAVEELGTGR WRDVKLRAFE DADHRTYVDL KDKWKTLVHT ASISPQQRRG EPVPQELLDR VLRAYGYWSQ HQGKHQGRGG GAHKDLDMNR
601: GRAVEAGVSV
101: VVNSFSFPDD GILERTPVCE TKNVKSEGVT EERGDVIVNT GFEQDGGLGA DAFNLEDATA LGVQFPKSVC VDGDVKSPSC LNKTSNGSLD RQGNHTKLGR
201: DDDDEKLYSY HKFSSKFKSY RSPTIRRIRK SLSSKYWKQM AKDFGHYRAD AGVKALYRKR KSCYGYNAWQ RETIYKRRRS PDRSSVVTSD GGLSSGSVSK
301: LPEKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKV RDDKKTLSQS GISSEENLTN LGFTLEPGPS KAPVPLCSQD
401: PLVSLPIDPT NLSERSAVSP TLDTETPHPD DVANPGNIVD NNHLELIPYQ KEITVDEEEP STDPKALVPL PALEAEALAI VPLNQKPKRT ELAQRRTRRP
501: FSVTEVEALV QAVEELGTGR WRDVKLRAFE DADHRTYVDL KDKWKTLVHT ASISPQQRRG EPVPQELLDR VLRAYGYWSQ HQGKHQGRGG GAHKDLDMNR
601: GRAVEAGVSV
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.