Factsheet for Zm00001d028608_P006

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39691	Sorghum	nucleus, plastid	83.62	82.44
Os03t0274300-01	Rice	nucleus	68.68	69.08
Zm00001d047808_P001	Maize	nucleus, plastid	73.13	68.14
HORVU4Hr1G059800.2	Barley	nucleus	66.95	67.44
TraesCS4D01G208600.1	Wheat	nucleus	66.38	66.86
TraesCS4A01G096700.1	Wheat	nucleus	66.24	66.71
TraesCS4B01G207700.1	Wheat	nucleus	66.09	66.47
GSMUA_Achr8P20810_001	Banana	nucleus	39.37	42.09
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.36	41.4
GSMUA_Achr7P15090_001	Banana	nucleus	40.52	40.69
VIT_06s0004g04940.t01	Wine grape	nucleus	39.8	39.8
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.79	37.92
AT3G46590.2	Thale cress	nucleus	28.3	35.62
Bra015585.1-P	Field mustard	nucleus	30.6	35.62
CDY06712	Canola	nucleus	30.32	35.4
CDY10282	Canola	nucleus	30.03	34.83
Solyc06g005590.2.1	Tomato	nucleus	34.48	34.83
GSMUA_Achr10P...	Banana	cytosol, plastid	4.6	34.78
Solyc05g054410.2.1	Tomato	nucleus	34.2	34.54
PGSC0003DMT400005476	Potato	nucleus	34.34	34.54
AT1G07540.1	Thale cress	nucleus	30.89	34.13
PGSC0003DMT400060234	Potato	nucleus	33.62	33.96
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	34.34	33.95
Solyc12g027690.1.1	Tomato	extracellular	7.47	33.55
Bra030689.1-P	Field mustard	nucleus	29.17	33.44
CDY15617	Canola	nucleus	28.3	33.39
KRG99966	Soybean	nucleus	28.88	33.33
AT5G59430.2	Thale cress	nucleus	27.59	33.22
KRH10245	Soybean	nucleus	33.76	32.64
KRH29783	Soybean	nucleus	32.33	32.61
KRH23087	Soybean	nucleus	33.48	32.45
PGSC0003DMT400077969	Potato	nucleus	32.33	32.37
KRH49110	Soybean	nucleus	28.02	32.18
VIT_08s0007g00500.t01	Wine grape	nucleus	31.61	32.02
Solyc06g076270.2.1	Tomato	nucleus	32.18	32.0
Bra002566.1-P	Field mustard	nucleus	25.86	31.63
KRH30983	Soybean	nucleus	30.75	31.52
Solyc04g011650.2.1	Tomato	nucleus	29.6	30.88
KRG97906	Soybean	nucleus	29.89	30.86
PGSC0003DMT400016260	Potato	nucleus	29.6	30.75
KRH24782	Soybean	nucleus	27.44	30.41
CDX86474	Canola	nucleus	23.28	29.08
Solyc12g027710.1.1	Tomato	cytosol	8.91	25.62
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	31.47	24.15
CDY33039	Canola	nucleus	25.86	21.77
CDX80268	Canola	nucleus	25.72	21.62

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:542534	UniProt:A0A1D6JY14	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626
InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONL96560.1	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717
PANTHER:PTHR21717:SF61	SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI00084443B9	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
EnsemblPlantsGene:Zm00001d028608	EnsemblPlants:Zm00001d028608_P006	EnsemblPlants:Zm00001d028608_T006	SEG:seg	:	:

Description

initiator-binding protein2Telomere repeat-binding protein 5

Coordinates

chr1:+:40713083..40717930

Molecular Weight (calculated)

75960.8 Da

IEP (calculated)

10.080

GRAVY (calculated)

-0.651

Length

696 amino acids

Sequence
(BLAST)

001: MVFQKRSSSE LEASGGGQVA EMPRVPKSAR GKRSVRKKEA QNPPQMSAFD LLATVAGKLL DEGVGSLGNM SAGAPALTAC AKDVRVKKEQ CDEEMKQFKH
101: EVTDQDSCNE SAILPHIVFQ RAVNNARNED PKAKSEAQDK ESSMISCTKA ELGCNFGVIA DRWSPESVES GAFTGDAVAS LMPPAPAGFH KNAPEMYNLL
201: DSMDVDVKPP PLVSSDSTGE MPLYGDKVHR STSLPRVSKG VGFFAVDRDD DDDKSSGCTH PSTTTNKDFR SNCTAEYSRV RKLLTSKYRK VAPARVYKSD
301: LSYSDVDRKP SFRNKKMHYT RQRTQRSTFK RRKLFDRHSV LASEFGTAHG KGNTKKVTGR DSHAVSLEAN KGTSSTPFQK SRGSNDCHVK LKIKSFKVPE
401: LLVEIPESAT VGSLKKTVLE AVTAILGGGL RVGVLHHGKK VRDDNKTLIQ AGIGQEDMLD NLGFSLEPNC TQNPQVQAPE DISFLETIDT AEPLARIAPA
501: DSSSKHGEVD LSQEFALTPL AMNYQGSDHD SVHSPGGVSS PDKVSTNSRA LVPVPAADPN AGAIVPANKS KRSPEQGQRR IRRPFSVAEV EALVLAVEKL
601: GTGRWRDVKL RAFDNAKHRT YVDLKVRTVK TNGRRWCTPR ASRRSSGVAS RCLRSCSTGS WRPRPTGPSS KPSSSLRRPR CWLRLACSPN KFDDPG

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.