CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06712	Canola	nucleus	90.33	90.94
CDY15617	Canola	nucleus	73.5	74.75
CDX86474	Canola	nucleus	66.17	71.27
AT1G07540.1	Thale cress	nucleus	72.33	68.89
CDY30842	Canola	nucleus	22.67	48.23
GSMUA_Achr8P20810_001	Banana	nucleus	41.17	37.94
CDX85624	Canola	mitochondrion	33.83	37.25
CDX70522	Canola	nucleus	35.67	37.02
GSMUA_Achr10P...	Banana	cytosol, plastid	5.67	36.96
CDY50353	Canola	nucleus	37.33	36.84
CDX78540	Canola	nucleus	37.5	36.82
CDY50529	Canola	nucleus	36.83	36.41
CDX91094	Canola	nucleus	33.67	36.27
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	41.67	35.11
CDY42156	Canola	nucleus	35.67	34.91
CDY68172	Canola	nucleus	32.67	34.75
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.33	34.73
CDY08423	Canola	nucleus	35.67	34.57
KXG39691	Sorghum	nucleus, plastid	40.5	34.42
Os03t0274300-01	Rice	nucleus	39.5	34.25
GSMUA_Achr7P15090_001	Banana	nucleus	39.17	33.91
TraesCS4A01G096700.1	Wheat	nucleus	38.83	33.72
TraesCS4D01G208600.1	Wheat	nucleus	38.83	33.72
HORVU4Hr1G059800.2	Barley	nucleus	38.83	33.72
TraesCS4B01G207700.1	Wheat	nucleus	38.67	33.53
CDX69626	Canola	nucleus	33.0	33.39
TraesCS3D01G533700.1	Wheat	nucleus, plastid	34.17	31.54
TraesCS3A01G528500.1	Wheat	nucleus, plastid	34.0	31.34
HORVU3Hr1G115540.2	Barley	nucleus, plastid	34.33	31.31
TraesCS3B01G597500.1	Wheat	nucleus, plastid	33.83	31.18
Zm00001d047808_P001	Maize	nucleus, plastid	38.17	30.66
Zm00001d028608_P006	Maize	nucleus	34.83	30.03
EES10985	Sorghum	mitochondrion	32.33	29.85
CDY33039	Canola	nucleus	35.17	25.51
CDX80268	Canola	nucleus	34.67	25.12
TraesCS6D01G378100.1	Wheat	nucleus	26.67	23.84
TraesCS6A01G392300.1	Wheat	nucleus	26.33	23.55
TraesCS6B01G432500.1	Wheat	nucleus	26.33	23.55
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.17	17.89
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.33	17.42
Os02t0817800-03	Rice	nucleus	11.67	11.06

Protein Annotations

EnsemblPlants:CDY10282	EnsemblPlantsGene:GSBRNA2T00032112001	Gene3D:1.10.246.220	GO:A0A078FB57	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	PFscan:PS51294	ProteinID:CDY10282	ProteinID:CDY10282.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEB2A0	UniProt:A0A078FB57	MapMan:15.5.2.2	:

Description

BnaC05g05250DBnaC05g05250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB57]

Coordinates

chrLK032001:-:904614..907257

Molecular Weight (calculated)

66909.7 Da

IEP (calculated)

9.985

GRAVY (calculated)

-0.670

Length

600 amino acids

Sequence
(BLAST)

001: MVLQRRLDYG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL ESGGNSSSSS NNAIGDGNEE DQCAVKTEPL YGGVQKVVEE RNCDHIHDNN
101: AERRFFVSEI LPKTHGMESF DRSPPPPKDF HFGSTSGVTS DSSEKLGTQE LGQSVCFRSE TNDKISMHGR LTNNCEPELT RNVVAEDKHH IGTCFKKPIP
201: PLVCSDDGEN FSARYTTKTF RSTLRIGDRK IKKVLASKYC KVSSKQKDTT VTNSDLDLKP SYYNKKPCLK SLRSERRYPI KKRRYFDGYT ASQSEETPKK
301: GSGFMSTIAC QKQPALQSRD SHVKLGIKSF KVPELFIEIP ETATVGSLKR TVLEAVTTIL EGGLRIGVLV HGKKVRDDSK MLLQSGISLD TLSDTLGFCL
401: EPNPPQSTKP LSPEDSDCVR PFNVPHSLTR CLASQGKHAK PSNSVESDLD SKPSAPNRAK PVYSRALIPV APPLHAQALN VVPPRKPKRS EVAQRRIRRP
501: FSVAEVEVLV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLMAHAYWSQ QQGKQQLLEG PHKLETSLGL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.